Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VII | Classification (family/domain) | HepT-MntA/HepT(toxin) |
Location | 1498466..1499265 | Replicon | chromosome |
Accession | NZ_CP113504 | ||
Organism | Pectobacterium brasiliense strain 21PCA_AGRO2 |
Toxin (Protein)
Gene name | hepT | Uniprot ID | - |
Locus tag | OWC53_RS06905 | Protein ID | WP_039468157.1 |
Coordinates | 1498466..1498885 (-) | Length | 140 a.a. |
Antitoxin (Protein)
Gene name | mntA | Uniprot ID | - |
Locus tag | OWC53_RS06910 | Protein ID | WP_039499124.1 |
Coordinates | 1498882..1499265 (-) | Length | 128 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OWC53_RS06885 (OWC53_06880) | 1493580..1494221 | + | 642 | WP_010281304.1 | uridine kinase | - |
OWC53_RS06890 (OWC53_06885) | 1494329..1494910 | + | 582 | WP_005974037.1 | dCTP deaminase | - |
OWC53_RS06895 (OWC53_06890) | 1494974..1496809 | + | 1836 | WP_039544044.1 | outer membrane assembly protein AsmA | - |
OWC53_RS06900 (OWC53_06895) | 1497062..1498414 | + | 1353 | WP_014914716.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
OWC53_RS06905 (OWC53_06900) | 1498466..1498885 | - | 420 | WP_039468157.1 | DUF86 domain-containing protein | Toxin |
OWC53_RS06910 (OWC53_06905) | 1498882..1499265 | - | 384 | WP_039499124.1 | nucleotidyltransferase domain-containing protein | Antitoxin |
OWC53_RS06915 (OWC53_06910) | 1499401..1500987 | - | 1587 | WP_014914717.1 | TerC family protein | - |
OWC53_RS06920 (OWC53_06915) | 1501715..1502812 | + | 1098 | WP_268198475.1 | UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase | - |
OWC53_RS06925 (OWC53_06920) | 1502930..1504066 | + | 1137 | WP_094432850.1 | polysaccharide export protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 140 a.a. Molecular weight: 16086.43 Da Isoelectric Point: 6.8630
>T265852 WP_039468157.1 NZ_CP113504:c1498885-1498466 [Pectobacterium brasiliense]
MTDILLNKSSTIQRCLRRIREEFDTEEGFRQNFTKQDSVILNIQRACEAAIDIANYLIRIKQLGIPQSSRDSFALLAANQ
IITLELSDNLQKMVGLRNIAVHDYQALNLDIVIHVISHRLSDFERFIKEIARYSDSQHL
MTDILLNKSSTIQRCLRRIREEFDTEEGFRQNFTKQDSVILNIQRACEAAIDIANYLIRIKQLGIPQSSRDSFALLAANQ
IITLELSDNLQKMVGLRNIAVHDYQALNLDIVIHVISHRLSDFERFIKEIARYSDSQHL
Download Length: 420 bp
Antitoxin
Download Length: 128 a.a. Molecular weight: 14340.49 Da Isoelectric Point: 4.7434
>AT265852 WP_039499124.1 NZ_CP113504:c1499265-1498882 [Pectobacterium brasiliense]
MFDEIVLTLKKQMPDIKIIYLFGSQATGNARADSDVDIAIMATRALDPVERWELSHQLAKTVGHDVDLIDLLQASTVLKM
EVVRNGKLLYDAEATAGEFEMTTLSMYQHLQKERADIIRSFNQDLKA
MFDEIVLTLKKQMPDIKIIYLFGSQATGNARADSDVDIAIMATRALDPVERWELSHQLAKTVGHDVDLIDLLQASTVLKM
EVVRNGKLLYDAEATAGEFEMTTLSMYQHLQKERADIIRSFNQDLKA
Download Length: 384 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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