Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3277144..3277415 | Replicon | chromosome |
| Accession | NZ_CP113493 | ||
| Organism | Escherichia coli strain GTEN_97 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3277182..3277285 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3277144..3277415 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5R32_RS15880 | 3274301..3275740 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E5R32_RS15885 | 3275858..3276094 | + | 237 | WP_001295499.1 | YebV family protein | - |
| E5R32_RS15890 | 3276199..3276390 | + | 192 | WP_001296140.1 | YebW family protein | - |
| E5R32_RS15895 | 3276391..3277047 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 3277144..3277415 | + | 272 | - | - | Antitoxin |
| - | 3277182..3277285 | - | 104 | - | - | Toxin |
| E5R32_RS15900 | 3277443..3277784 | - | 342 | WP_000976472.1 | YebY family protein | - |
| E5R32_RS15905 | 3277797..3278669 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| E5R32_RS15910 | 3278673..3279047 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E5R32_RS15915 | 3279186..3279416 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E5R32_RS15920 | 3279518..3280174 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| E5R32_RS15925 | 3280198..3280860 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3274295..3284725 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T265791 NZ_CP113493:c3277285-3277182 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT265791 NZ_CP113493:3277144-3277415 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
