Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1950577..1950722 | Replicon | chromosome |
| Accession | NZ_CP113216 | ||
| Organism | Klebsiella pneumoniae strain SCLC9-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1950613..1950715 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1950577..1950722 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OT489_RS09645 | 1945707..1947767 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OT489_RS09650 | 1947771..1948430 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| OT489_RS09655 | 1948509..1948739 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OT489_RS09660 | 1948852..1949226 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OT489_RS09665 | 1949230..1950099 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| OT489_RS09670 | 1950116..1950454 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1950577..1950722 | - | 146 | - | - | Antitoxin |
| - | 1950613..1950715 | + | 103 | - | - | Toxin |
| OT489_RS09675 | 1951090..1951233 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OT489_RS09680 | 1951338..1952306 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OT489_RS09685 | 1952463..1953116 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OT489_RS09690 | 1953113..1953304 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OT489_RS09695 | 1953402..1953641 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OT489_RS09700 | 1953757..1955190 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T265611 NZ_CP113216:1950613-1950715 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT265611 NZ_CP113216:c1950722-1950577 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
