Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3260324..3260469 | Replicon | chromosome |
| Accession | NZ_CP113191 | ||
| Organism | Klebsiella pneumoniae strain SYCC2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3260331..3260433 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3260324..3260469 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OT482_RS18810 | 3255855..3257288 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OT482_RS18815 | 3257404..3257643 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OT482_RS18820 | 3257741..3257932 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OT482_RS18825 | 3257929..3258582 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OT482_RS18830 | 3258739..3259707 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OT482_RS18835 | 3259812..3259955 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3260324..3260469 | + | 146 | - | - | Antitoxin |
| - | 3260331..3260433 | - | 103 | - | - | Toxin |
| OT482_RS18840 | 3260592..3260930 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OT482_RS18845 | 3260947..3261816 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| OT482_RS18850 | 3261820..3262194 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OT482_RS18855 | 3262307..3262537 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OT482_RS18860 | 3262616..3263275 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| OT482_RS18865 | 3263279..3265339 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T265533 NZ_CP113191:c3260433-3260331 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT265533 NZ_CP113191:3260324-3260469 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
