Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1970479..1970624 | Replicon | chromosome |
| Accession | NZ_CP113178 | ||
| Organism | Klebsiella pneumoniae strain SYCC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1970515..1970617 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1970479..1970624 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OT490_RS09500 | 1965609..1967669 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OT490_RS09505 | 1967673..1968332 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| OT490_RS09510 | 1968411..1968641 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OT490_RS09515 | 1968754..1969128 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OT490_RS09520 | 1969132..1970001 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| OT490_RS09525 | 1970018..1970356 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1970479..1970624 | - | 146 | - | - | Antitoxin |
| - | 1970515..1970617 | + | 103 | - | - | Toxin |
| OT490_RS09530 | 1970993..1971136 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OT490_RS09535 | 1971241..1972209 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OT490_RS09540 | 1972366..1973019 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OT490_RS09545 | 1973016..1973207 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OT490_RS09550 | 1973305..1973544 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OT490_RS09555 | 1973660..1975093 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T265502 NZ_CP113178:1970515-1970617 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT265502 NZ_CP113178:c1970624-1970479 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
