Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966252..1966397 | Replicon | chromosome |
| Accession | NZ_CP113173 | ||
| Organism | Klebsiella pneumoniae strain TSYCC10-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966288..1966390 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966252..1966397 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OT486_RS09735 | 1961382..1963442 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OT486_RS09740 | 1963446..1964105 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OT486_RS09745 | 1964184..1964414 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OT486_RS09750 | 1964527..1964901 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OT486_RS09755 | 1964905..1965774 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| OT486_RS09760 | 1965791..1966129 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1966252..1966397 | - | 146 | - | - | Antitoxin |
| - | 1966288..1966390 | + | 103 | - | - | Toxin |
| OT486_RS09765 | 1966765..1966908 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OT486_RS09770 | 1967013..1967981 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OT486_RS09775 | 1968138..1968791 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OT486_RS09780 | 1968788..1968979 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OT486_RS09785 | 1969077..1969316 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OT486_RS09790 | 1969432..1970865 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T265485 NZ_CP113173:1966288-1966390 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT265485 NZ_CP113173:c1966397-1966252 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
