Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1531303..1531446 | Replicon | chromosome |
| Accession | NZ_CP113163 | ||
| Organism | Citrobacter braakii strain LBA3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1531308..1531411 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1531303..1531446 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKJ05_RS07445 (MKJ05_07445) | 1527855..1529040 | + | 1186 | Protein_1463 | recombinase RecT | - |
| MKJ05_RS07450 (MKJ05_07450) | 1529075..1529557 | + | 483 | WP_267588999.1 | hypothetical protein | - |
| MKJ05_RS07455 (MKJ05_07455) | 1529597..1529839 | + | 243 | WP_267589000.1 | DUF4060 family protein | - |
| MKJ05_RS07460 (MKJ05_07460) | 1529904..1530176 | + | 273 | WP_119174329.1 | excisionase | - |
| MKJ05_RS07465 (MKJ05_07465) | 1530145..1531230 | + | 1086 | WP_221922739.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1531303..1531446 | + | 144 | - | - | Antitoxin |
| - | 1531308..1531411 | - | 104 | - | - | Toxin |
| MKJ05_RS07470 (MKJ05_07470) | 1531567..1531905 | - | 339 | WP_114682578.1 | YebY family protein | - |
| MKJ05_RS07475 (MKJ05_07475) | 1531926..1532798 | - | 873 | WP_267589001.1 | copper homeostasis membrane protein CopD | - |
| MKJ05_RS07480 (MKJ05_07480) | 1532802..1533176 | - | 375 | WP_114682576.1 | CopC domain-containing protein YobA | - |
| MKJ05_RS07485 (MKJ05_07485) | 1533320..1533550 | + | 231 | WP_114682575.1 | DNA polymerase III subunit theta | - |
| MKJ05_RS07490 (MKJ05_07490) | 1533658..1534314 | + | 657 | WP_114682574.1 | carbon-nitrogen hydrolase family protein | - |
| MKJ05_RS07495 (MKJ05_07495) | 1534338..1535000 | + | 663 | WP_267589002.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopA | 1468467..1537081 | 68614 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T265433 NZ_CP113163:c1531411-1531308 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT265433 NZ_CP113163:1531303-1531446 [Citrobacter braakii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
