265394

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PfiT-PfiA/ParE(toxin)
Location 3227250..3227858 Replicon chromosome
Accession NZ_CP113096
Organism Pseudomonas citronellolis strain G5Li.T10

Toxin (Protein)


Gene name PfiT Uniprot ID A0A1S1GNG8
Locus tag OSS47_RS14745 Protein ID WP_043272446.1
Coordinates 3227250..3227597 (-) Length 116 a.a.

Antitoxin (Protein)


Gene name PfiA Uniprot ID -
Locus tag OSS47_RS14750 Protein ID WP_081884705.1
Coordinates 3227607..3227858 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OSS47_RS14730 (OSS47_14730) 3224007..3224681 - 675 WP_009618249.1 DUF4194 domain-containing protein -
OSS47_RS14735 (OSS47_14735) 3224713..3226185 - 1473 WP_009618251.1 DUF3375 domain-containing protein -
OSS47_RS14740 (OSS47_14740) 3226281..3226886 - 606 WP_009618253.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
OSS47_RS14745 (OSS47_14745) 3227250..3227597 - 348 WP_043272446.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OSS47_RS14750 (OSS47_14750) 3227607..3227858 - 252 WP_081884705.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OSS47_RS14755 (OSS47_14755) 3228316..3229731 + 1416 WP_267853790.1 amino acid permease -
OSS47_RS14760 (OSS47_14760) 3229857..3230393 + 537 WP_043272448.1 2,4'-dihydroxyacetophenone dioxygenase family protein -
OSS47_RS14765 (OSS47_14765) 3230450..3231355 + 906 WP_267853791.1 LysR family transcriptional regulator -
OSS47_RS14770 (OSS47_14770) 3231418..3232659 + 1242 WP_267853792.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-100)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 116 a.a.        Molecular weight: 12935.75 Da        Isoelectric Point: 4.6337

>T265394 WP_043272446.1 NZ_CP113096:c3227597-3227250 [Pseudomonas citronellolis]
MSKVVIRLTDTAEQSIEDQVHHLAQFQGSQAALQSVLSLLDEIEEKISLTPQGYPISQQASLLGVLNYRELNTGPYRVFY
ELHEEQGEVAVILVLRQKQSVEQQLIRYCLVGPIG

Download         Length: 348 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9500.82 Da        Isoelectric Point: 8.4753

>AT265394 WP_081884705.1 NZ_CP113096:c3227858-3227607 [Pseudomonas citronellolis]
MRVETISYLKRHAADLDLSEPMVVTQNGVPAYVIESYAERKQRDEAIALVKLLAIGSRQYAEGKHRSVDDLKARLSRRFD
QPE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A1S1GNG8

Antitoxin

Source ID Structure

References