Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 2242809..2243479 Replicon chromosome
Accession NZ_CP113083
Organism Rhodopseudomonas palustris strain CGA0092

Toxin (Protein)


Gene name vapC Uniprot ID Q6N8B2
Locus tag OR798_RS10270 Protein ID WP_011157547.1
Coordinates 2242809..2243219 (-) Length 137 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag OR798_RS10275 Protein ID WP_011157548.1
Coordinates 2243216..2243479 (-) Length 88 a.a.

Genomic Context

OR798_RS10255OR798_RS10260OR798_RS10265OR798_RS10280OR798_RS10295OR798_RS10300OR798_RS10305OR798_RS10270OR798_RS10275OR798_RS10285OR798_RS10290
Location: 2239198..2239524 (327 bp)
Type: Others
Protein ID: WP_011157544.1
Location: 2239691..2241481 (1791 bp)
Type: Others
Protein ID: WP_011157545.1
Location: 2241517..2242554 (1038 bp)
Type: Others
Protein ID: WP_042441504.1
Location: 2243660..2244085 (426 bp)
Type: Others
Protein ID: WP_011157549.1
Location: 2246246..2247637 (1392 bp)
Type: Others
Protein ID: WP_011157552.1
Location: 2247634..2248170 (537 bp)
Type: Others
Protein ID: WP_147408398.1
Location: 2248167..2248298 (132 bp)
Type: Others
Protein ID: WP_011157553.1
Location: 2242809..2243219 (411 bp)
Type: Toxin
Protein ID: WP_011157547.1
Location: 2243216..2243479 (264 bp)
Type: Antitoxin
Protein ID: WP_011157548.1
Location: 2244182..2245351 (1170 bp)
Type: Others
Protein ID: WP_011157550.1
Location: 2245537..2245845 (309 bp)
Type: Others
Protein ID: WP_011157551.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
OR798_RS10255 (OR798_10255)2239198..2239524+327WP_011157544.1hypothetical protein-
OR798_RS10260 (OR798_10260)2239691..2241481+1791WP_011157545.1sulfatase-like hydrolase/transferase-
OR798_RS10265 (OR798_10265)2241517..2242554+1038WP_042441504.1transporter-
OR798_RS10270 (OR798_10270)2242809..2243219-411WP_011157547.1type II toxin-antitoxin system VapC family toxinToxin
OR798_RS10275 (OR798_10275)2243216..2243479-264WP_011157548.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
OR798_RS10280 (OR798_10280)2243660..2244085+426WP_011157549.1cupin domain-containing protein-
OR798_RS10285 (OR798_10285)2244182..2245351-1170WP_011157550.1DUF2865 domain-containing protein-
OR798_RS10290 (OR798_10290)2245537..2245845-309WP_011157551.1hypothetical protein-
OR798_RS10295 (OR798_10295)2246246..2247637+1392WP_011157552.1cysteine--tRNA ligase-
OR798_RS10300 (OR798_10300)2247634..2248170+537WP_147408398.1hypothetical protein-
OR798_RS10305 (OR798_10305)2248167..2248298+132WP_011157553.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-124)

Antitoxin

SpoVT-AbrB domain

(9-58)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 15136.48 Da        Isoelectric Point: 5.6802

>T265369 WP_011157547.1 NZ_CP113083:c2243219-2242809 [Rhodopseudomonas palustris]
MSGWMLDTNVASHVIRGDRREIIERLVALPISDVVISSITEGELLYGLAKRGYPTALSERVREFLLRVDVLPWDHEVTKT
YADLRAVCEAKGVTLSPLDMMIAAHAAATNATLVTRDKAFSRVPSPLRIEDWAEMS

Download         Length: 411 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9888.91 Da        Isoelectric Point: 4.7969

>AT265369 WP_011157548.1 NZ_CP113083:c2243479-2243216 [Rhodopseudomonas palustris]
VTSRTAKIFTTGRSQAVRLPAEFRFEGSEVFVRRDPRTGDVILSRKPDSWDGLLQLHQSADVPDDFLGPSDRSQLPQDRD
PFEGWTE

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBQ6N8B2

Antitoxin

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Source
ID
Structure
No matching records found

References