Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 709989..710614 Replicon chromosome
Accession NZ_CP112997
Organism Mycobacterium tuberculosis variant bovis strain 2016/0386

Toxin (Protein)


Gene name vapC Uniprot ID G0TQA0
Locus tag ORO20_RS03260 Protein ID WP_003403218.1
Coordinates 710213..710614 (+) Length 134 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ36
Locus tag ORO20_RS03255 Protein ID WP_003403213.1
Coordinates 709989..710216 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ORO20_RS03230 (ORO20_03230) 705168..705389 - 222 WP_003898525.1 DUF4926 domain-containing protein -
ORO20_RS03235 (ORO20_03235) 705531..706136 + 606 WP_003898526.1 hypothetical protein -
ORO20_RS03240 (ORO20_03240) 706155..708722 - 2568 WP_003900188.1 SEC-C metal-binding domain-containing protein -
ORO20_RS03245 (ORO20_03245) 708806..709555 + 750 WP_003898528.1 hypothetical protein -
ORO20_RS03250 (ORO20_03250) 709552..709794 + 243 WP_003403210.1 hypothetical protein -
ORO20_RS03255 (ORO20_03255) 709989..710216 + 228 WP_003403213.1 antitoxin VapB29 Antitoxin
ORO20_RS03260 (ORO20_03260) 710213..710614 + 402 WP_003403218.1 type II toxin-antitoxin system ribonuclease VapC29 Toxin
ORO20_RS03265 (ORO20_03265) 710743..710826 + 84 Protein_647 galactose-1-phosphate uridylyltransferase -
ORO20_RS03270 (ORO20_03270) 710845..711927 + 1083 WP_031702118.1 galactose-1-phosphate uridylyltransferase -
ORO20_RS03275 (ORO20_03275) 711924..713015 + 1092 WP_003403225.1 galactokinase -
ORO20_RS03280 (ORO20_03280) 713410..714567 + 1158 WP_003903091.1 hypothetical protein -
ORO20_RS03285 (ORO20_03285) 714578..715525 + 948 WP_003403232.1 DUF732 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-120)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 134 a.a.        Molecular weight: 13937.76 Da        Isoelectric Point: 5.7441

>T265048 WP_003403218.1 NZ_CP112997:710213-710614 [Mycobacterium tuberculosis variant bovis]
VTVLLDANVLIALVVAEHVHHDAAADWLMASDTGFATCPMTQGSLVRFLVRSGQSAAAARDVVSAVQCTSRHEFWPDALS
FAGVEVAGVVGHRQVTDAYLAQLARSHDGQLATLDSGLAHLHGDVAVLIPTTT

Download         Length: 402 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8163.17 Da        Isoelectric Point: 5.6307

>AT265048 WP_003403213.1 NZ_CP112997:709989-710216 [Mycobacterium tuberculosis variant bovis]
VRTTIDLPQDLHKQALAIARDTHRTLSETVADLMRRGLAANRPTALSSDPRTGLPLVSVGTVVTSEDVRSLEDEQ

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQA0

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BSC9

References