Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2680527..2680728 | Replicon | chromosome |
| Accession | NZ_CP112980 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain CNCI 7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2680532..2680635 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2680527..2680728 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MTX27_RS12845 (MTX27_12840) | 2676793..2678235 | + | 1443 | WP_072204417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MTX27_RS12850 (MTX27_12845) | 2678342..2678581 | + | 240 | WP_003859885.1 | YebV family protein | - |
| MTX27_RS12855 (MTX27_12850) | 2678616..2679260 | - | 645 | WP_283503188.1 | protein-serine/threonine phosphatase | - |
| MTX27_RS12860 (MTX27_12855) | 2679428..2680408 | + | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| MTX27_RS12865 (MTX27_12860) | 2680454..2680651 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2680527..2680728 | + | 202 | - | - | Antitoxin |
| - | 2680532..2680635 | - | 104 | - | - | Toxin |
| MTX27_RS12870 (MTX27_12865) | 2680777..2681115 | - | 339 | WP_045343594.1 | YebY family protein | - |
| MTX27_RS12875 (MTX27_12870) | 2681132..2682001 | - | 870 | WP_283503189.1 | copper homeostasis membrane protein CopD | - |
| MTX27_RS12880 (MTX27_12875) | 2682003..2682374 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| MTX27_RS12885 (MTX27_12880) | 2682512..2682742 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| MTX27_RS12890 (MTX27_12885) | 2682854..2683504 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| MTX27_RS12895 (MTX27_12890) | 2683529..2684191 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264973 NZ_CP112980:c2680635-2680532 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT264973 NZ_CP112980:2680527-2680728 [Enterobacter hormaechei subsp. xiangfangensis]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
