Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1979215..1979381 | Replicon | chromosome |
| Accession | NZ_CP112887 | ||
| Organism | Raoultella electrica strain S2-IND-01-C | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1979273..1979376 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1979215..1979381 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OR613_RS09375 (OR613_09380) | 1974353..1976413 | + | 2061 | WP_131050314.1 | oligopeptidase B | - |
| OR613_RS09380 (OR613_09385) | 1976419..1977078 | - | 660 | WP_131050313.1 | exodeoxyribonuclease X | - |
| OR613_RS09385 (OR613_09390) | 1977157..1977387 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| OR613_RS09390 (OR613_09395) | 1977514..1977888 | + | 375 | WP_100682318.1 | CopC domain-containing protein YobA | - |
| OR613_RS09395 (OR613_09400) | 1977892..1978761 | + | 870 | WP_131050312.1 | copper homeostasis membrane protein CopD | - |
| OR613_RS09400 (OR613_09405) | 1978778..1979116 | + | 339 | WP_160704989.1 | YebY family protein | - |
| - | 1979215..1979381 | - | 167 | - | - | Antitoxin |
| - | 1979273..1979376 | + | 104 | - | - | Toxin |
| OR613_RS09405 (OR613_09410) | 1979683..1979826 | - | 144 | WP_141964342.1 | Ecr family regulatory small membrane protein | - |
| OR613_RS09410 (OR613_09415) | 1979948..1980919 | - | 972 | WP_207304705.1 | VirK/YbjX family protein | - |
| OR613_RS09415 (OR613_09420) | 1981063..1981716 | + | 654 | WP_131047781.1 | protein-serine/threonine phosphatase | - |
| OR613_RS09420 (OR613_09425) | 1981713..1981904 | - | 192 | WP_100682323.1 | YebW family protein | - |
| OR613_RS09425 (OR613_09430) | 1981997..1982236 | - | 240 | WP_100682324.1 | YebV family protein | - |
| OR613_RS09430 (OR613_09435) | 1982351..1983784 | - | 1434 | WP_131047782.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264944 NZ_CP112887:1979273-1979376 [Raoultella electrica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT264944 NZ_CP112887:c1979381-1979215 [Raoultella electrica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
