Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 3410190..3410817 Replicon chromosome
Accession NZ_CP112874
Organism Pseudanabaena galeata CCNP1313

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag OA858_RS15450 Protein ID WP_281006097.1
Coordinates 3410190..3410609 (-) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag OA858_RS15455 Protein ID WP_281006098.1
Coordinates 3410599..3410817 (-) Length 73 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OA858_RS15430 (OA858_15425) 3407029..3408765 + 1737 WP_281006093.1 EAL domain-containing protein -
OA858_RS15435 (OA858_15430) 3409194..3409598 - 405 WP_281006094.1 DUF6516 family protein -
OA858_RS15440 (OA858_15435) 3409588..3409908 - 321 WP_281006095.1 hypothetical protein -
OA858_RS15445 (OA858_15440) 3410028..3410162 + 135 WP_281006096.1 hypothetical protein -
OA858_RS15450 (OA858_15445) 3410190..3410609 - 420 WP_281006097.1 putative toxin-antitoxin system toxin component, PIN family Toxin
OA858_RS15455 (OA858_15450) 3410599..3410817 - 219 WP_281006098.1 hypothetical protein Antitoxin
OA858_RS15460 (OA858_15455) 3410804..3411031 + 228 WP_281006099.1 hypothetical protein -
OA858_RS15465 (OA858_15460) 3411133..3411381 + 249 WP_281006100.1 type II toxin-antitoxin system HicB family antitoxin -
OA858_RS15470 (OA858_15465) 3411381..3411593 + 213 WP_281006101.1 type II toxin-antitoxin system HicA family toxin -
OA858_RS15475 (OA858_15470) 3411774..3413243 - 1470 WP_281006102.1 EH signature domain-containing protein -
OA858_RS15480 (OA858_15475) 3413240..3413935 - 696 WP_281006103.1 OmpA family protein -
OA858_RS15485 (OA858_15480) 3413939..3415753 - 1815 WP_281006104.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN family, putative toxin-antitoxin system toxin component

(7-119)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 15838.39 Da        Isoelectric Point: 4.7195

>T264924 WP_281006097.1 NZ_CP112874:c3410609-3410190 [Pseudanabaena galeata CCNP1313]
MQGNPLRLVIDTNIWISFLIGKSLTGLSQAIISDQVIVLFSDDLFGELIKVLKRPKFKKYFSETAIEDLVTLLYEKVELI
EITHHFEDCRDAKDNFLLDLAVSGHANYLVTGDADLLILNPFQGVEIISYQHFQNLILK

Download         Length: 420 bp

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8332.45 Da        Isoelectric Point: 4.6653

>AT264924 WP_281006098.1 NZ_CP112874:c3410817-3410599 [Pseudanabaena galeata CCNP1313]
MNVSISIDFSQLKTVISQCNLQEKLELLQLLEKDTFSVRFNKFLSSVQTNELSLEDITQEVEAVRQANYHAR

Download         Length: 219 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References