Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2009234..2009400 | Replicon | chromosome |
| Accession | NZ_CP111115 | ||
| Organism | Raoultella sp. DY2415 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2009292..2009395 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2009234..2009400 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQV00_RS09305 | 2004372..2006432 | + | 2061 | WP_032724251.1 | oligopeptidase B | - |
| OQV00_RS09310 | 2006438..2007097 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| OQV00_RS09315 | 2007176..2007406 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| OQV00_RS09320 | 2007533..2007907 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| OQV00_RS09325 | 2007911..2008780 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| OQV00_RS09330 | 2008797..2009135 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 2009234..2009400 | - | 167 | - | - | Antitoxin |
| - | 2009292..2009395 | + | 104 | - | - | Toxin |
| OQV00_RS09335 | 2009705..2009848 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| OQV00_RS09340 | 2009969..2010940 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| OQV00_RS09345 | 2011083..2011727 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| OQV00_RS09350 | 2011733..2011924 | - | 192 | WP_004863962.1 | YebW family protein | - |
| OQV00_RS09355 | 2012018..2012257 | - | 240 | WP_004863958.1 | YebV family protein | - |
| OQV00_RS09360 | 2012372..2013805 | - | 1434 | WP_088402078.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264860 NZ_CP111115:2009292-2009395 [Raoultella sp. DY2415]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT264860 NZ_CP111115:c2009400-2009234 [Raoultella sp. DY2415]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
