264857

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 5472384..5474110 Replicon chromosome
Accession NZ_CP111114
Organism Pseudomonas koreensis strain FP1691

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag OPS05_RS24730 Protein ID WP_096796317.1
Coordinates 5472384..5473028 (+) Length 215 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag OPS05_RS24735 Protein ID WP_134787420.1
Coordinates 5473025..5474110 (+) Length 362 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OPS05_RS24705 (OPS05_24705) 5467787..5468599 + 813 WP_027612913.1 zinc-dependent peptidase -
OPS05_RS24710 (OPS05_24710) 5468712..5469239 + 528 WP_008052339.1 inorganic diphosphatase -
OPS05_RS24715 (OPS05_24715) 5469463..5470209 + 747 WP_027612915.1 helix-turn-helix transcriptional regulator -
OPS05_RS24720 (OPS05_24720) 5470718..5471638 + 921 WP_098965795.1 restriction endonuclease -
OPS05_RS24725 (OPS05_24725) 5471824..5472387 + 564 WP_134787419.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
OPS05_RS24730 (OPS05_24730) 5472384..5473028 + 645 WP_096796317.1 DUF4433 domain-containing protein Toxin
OPS05_RS24735 (OPS05_24735) 5473025..5474110 + 1086 WP_134787420.1 macro domain-containing protein Antitoxin
OPS05_RS24740 (OPS05_24740) 5474284..5474844 + 561 WP_134787421.1 hypothetical protein -
OPS05_RS24745 (OPS05_24745) 5474860..5475294 + 435 WP_134787422.1 hypothetical protein -
OPS05_RS24750 (OPS05_24750) 5475318..5476130 - 813 WP_098965801.1 DUF2135 domain-containing protein -
OPS05_RS24755 (OPS05_24755) 5476134..5477753 - 1620 WP_134787423.1 DUF2300 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(14-213)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 215 a.a.        Molecular weight: 24904.56 Da        Isoelectric Point: 6.9118

>T264857 WP_096796317.1 NZ_CP111114:5472384-5473028 [Pseudomonas koreensis]
MIYTNLNPEKALIWRIVHRDNLPWILDNGLHCANSEAKAPQYVNIGNVDLIDKRRFRQVPIAPEGVLADYVPFYFTPFSV
MMQNIHSGWSVQQRGNDEIVILVSSLYRVEELGLPFVFTNAHAYPSWTNYYSDLANLDQIDWSILQRRDFKRDPDDPRKM
ERYQAEALIHQHLPITGLLGIMCHTDAMKVRIEADVAVRGLTLPVHARPKWYFQ

Download         Length: 645 bp

Antitoxin


Download         Length: 362 a.a.        Molecular weight: 40668.82 Da        Isoelectric Point: 6.5078

>AT264857 WP_134787420.1 NZ_CP111114:5473025-5474110 [Pseudomonas koreensis]
MIRFTQGNLLEAKTEALVNTVNTVGVMGKGIALMFKERFAQNYRLYAAACKAGDVETGKMHVTATNELDGPRWIVNFPTK
RHWRYPSQMAWITEGLHDLRRFLLENDVKSVAVPPLGAGNGGLKWPEVREQIVEVLGDLDVDVLVFEPSSQYLNVAKRDG
VEQLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERAIEKIPGTENPLNLKFVAHKFGPYANRLEHLLNNLDGSYLH
CDKRISDAGITDVIWFDQDRKTFLQTYLKTEAKEYSQALERTAELIDGFESPFGMELLATVDWLLIRERIAPTVPAVRKA
LMNWDGGSGAAVRKNKLFDDQALGIAITRLTSTSFSPEMAA

Download         Length: 1086 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References