Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 892523..893064 Replicon chromosome
Accession NZ_CP111110
Organism Pseudomonas chengduensis strain BC1815

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OF113_RS04050 Protein ID WP_266207838.1
Coordinates 892523..892819 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OF113_RS04055 Protein ID WP_021487971.1
Coordinates 892807..893064 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OF113_RS04040 (OF113_04040) 889758..891200 + 1443 WP_266207836.1 TldD/PmbA family protein -
OF113_RS04045 (OF113_04045) 891200..892519 + 1320 WP_266207837.1 metallopeptidase TldD-related protein -
OF113_RS04050 (OF113_04050) 892523..892819 - 297 WP_266207838.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OF113_RS04055 (OF113_04055) 892807..893064 - 258 WP_021487971.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OF113_RS04060 (OF113_04060) 893132..894256 - 1125 WP_266207840.1 class I SAM-dependent methyltransferase -
OF113_RS04065 (OF113_04065) 894504..895280 + 777 WP_045734041.1 ferredoxin--NADP reductase -
OF113_RS04070 (OF113_04070) 895281..896306 - 1026 WP_104730348.1 hemolysin family protein -
OF113_RS04075 (OF113_04075) 896547..896795 + 249 WP_266207842.1 YdcH family protein -
OF113_RS04080 (OF113_04080) 896864..897142 + 279 WP_021487976.1 DUF465 domain-containing protein -
OF113_RS04085 (OF113_04085) 897404..897880 - 477 WP_266207843.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 11349.22 Da        Isoelectric Point: 5.1297

>T264842 WP_266207838.1 NZ_CP111110:c892819-892523 [Pseudomonas chengduensis]
MAEIVWTNTALEQLADLAQYIALDKPDAARALVRRVVETVSRLVDFPLSGRVPDELPQSVYREIGVPPCRIFYRYTDATV
FIIHIMREERMLRAQMLE

Download         Length: 297 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9757.31 Da        Isoelectric Point: 7.3181

>AT264842 WP_021487971.1 NZ_CP111110:c893064-892807 [Pseudomonas chengduensis]
MKVELVTNLKRQATKILADLHESKEPVLITEHGMPSAYLVDVDDYQFMQKRLALLDALARGERAVIEGNTLNHEQAKERL
SKWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References