Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1818864..1819135 | Replicon | chromosome |
| Accession | NZ_CP111008 | ||
| Organism | Escherichia coli strain J53-p130 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1818994..1819097 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1818864..1819135 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI87_RS08770 | 1815419..1816081 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ORI87_RS08775 | 1816105..1816761 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| ORI87_RS08780 | 1816863..1817093 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ORI87_RS08785 | 1817232..1817606 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ORI87_RS08790 | 1817610..1818482 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| ORI87_RS08795 | 1818495..1818836 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1818864..1819135 | - | 272 | - | - | Antitoxin |
| - | 1818994..1819097 | + | 104 | - | - | Toxin |
| ORI87_RS08800 | 1819232..1819888 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| ORI87_RS08805 | 1819889..1820080 | - | 192 | WP_000457842.1 | YebW family protein | - |
| ORI87_RS08810 | 1820185..1820421 | - | 237 | WP_001295499.1 | YebV family protein | - |
| ORI87_RS08815 | 1820539..1821978 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264780 NZ_CP111008:1818994-1819097 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT264780 NZ_CP111008:c1819135-1818864 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
