Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 555045..555313 | Replicon | chromosome |
| Accession | NZ_CP110996 | ||
| Organism | Escherichia coli strain XYEH3783 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 555083..555185 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 555045..555313 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI30_RS02795 | 552201..553640 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ORI30_RS02800 | 553759..553995 | + | 237 | WP_001295499.1 | YebV family protein | - |
| ORI30_RS02805 | 554100..554291 | + | 192 | WP_024186842.1 | YebW family protein | - |
| ORI30_RS02810 | 554292..554948 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 555045..555313 | + | 269 | - | - | Antitoxin |
| - | 555083..555185 | - | 103 | - | - | Toxin |
| ORI30_RS02815 | 555343..555684 | - | 342 | WP_000984819.1 | YebY family protein | - |
| ORI30_RS02820 | 555697..556569 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| ORI30_RS02825 | 556573..556947 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ORI30_RS02830 | 557086..557316 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ORI30_RS02835 | 557418..558074 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| ORI30_RS02840 | 558098..558760 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T264686 NZ_CP110996:c555185-555083 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT264686 NZ_CP110996:555045-555313 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
