Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011469..2011740 | Replicon | chromosome |
| Accession | NZ_CP110988 | ||
| Organism | Escherichia coli strain XYEH3314 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011599..2011702 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011469..2011740 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI32_RS09685 | 2008024..2008686 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ORI32_RS09690 | 2008710..2009366 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| ORI32_RS09695 | 2009468..2009698 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ORI32_RS09700 | 2009837..2010211 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ORI32_RS09705 | 2010215..2011087 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| ORI32_RS09710 | 2011100..2011441 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2011469..2011740 | - | 272 | - | - | Antitoxin |
| - | 2011599..2011702 | + | 104 | - | - | Toxin |
| ORI32_RS09715 | 2011837..2012493 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| ORI32_RS09720 | 2012494..2012685 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ORI32_RS09725 | 2012790..2013026 | - | 237 | WP_001295499.1 | YebV family protein | - |
| ORI32_RS09730 | 2013144..2014583 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1937193..2019970 | 82777 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264670 NZ_CP110988:2011599-2011702 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT264670 NZ_CP110988:c2011740-2011469 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
