264547

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3335321..3335466 Replicon chromosome
Accession NZ_CP110941
Organism Klebsiella pneumoniae subsp. pneumoniae strain LC-1873/18

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3335328..3335430 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3335321..3335466 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NPY10_RS16500 (NPY10_16500) 3330853..3332286 + 1434 WP_004148845.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
NPY10_RS16505 (NPY10_16505) 3332402..3332641 + 240 WP_002911393.1 YebV family protein -
NPY10_RS16510 (NPY10_16510) 3332739..3332930 + 192 WP_002911395.1 YebW family protein -
NPY10_RS16515 (NPY10_16515) 3332927..3333580 - 654 WP_002911396.1 protein-serine/threonine phosphatase -
NPY10_RS16520 (NPY10_16520) 3333737..3334705 + 969 WP_004151446.1 VirK/YbjX family protein -
NPY10_RS16525 (NPY10_16525) 3334810..3334953 + 144 WP_002911398.1 Ecr family regulatory small membrane protein -
- 3335321..3335466 + 146 - - Antitoxin
- 3335328..3335430 - 103 - - Toxin
NPY10_RS16530 (NPY10_16530) 3335589..3335927 - 339 WP_002911404.1 YebY family protein -
NPY10_RS16535 (NPY10_16535) 3335944..3336813 - 870 WP_004151447.1 copper homeostasis membrane protein CopD -
NPY10_RS16540 (NPY10_16540) 3336817..3337191 - 375 WP_004151448.1 CopC domain-containing protein YobA -
NPY10_RS16545 (NPY10_16545) 3337304..3337534 + 231 WP_002911406.1 DNA polymerase III subunit theta -
NPY10_RS16550 (NPY10_16550) 3337613..3338272 + 660 WP_002911407.1 exodeoxyribonuclease X -
NPY10_RS16555 (NPY10_16555) 3338276..3340336 - 2061 WP_004151449.1 oligopeptidase B -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T264547 NZ_CP110941:c3335430-3335328 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT264547 NZ_CP110941:3335321-3335466 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References