Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3334592..3334737 | Replicon | chromosome |
| Accession | NZ_CP110936 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain LC-1736/18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3334599..3334701 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3334592..3334737 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NPY06_RS16500 (NPY06_16500) | 3330124..3331557 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NPY06_RS16505 (NPY06_16505) | 3331673..3331912 | + | 240 | WP_002911393.1 | YebV family protein | - |
| NPY06_RS16510 (NPY06_16510) | 3332010..3332201 | + | 192 | WP_002911395.1 | YebW family protein | - |
| NPY06_RS16515 (NPY06_16515) | 3332198..3332851 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| NPY06_RS16520 (NPY06_16520) | 3333008..3333976 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NPY06_RS16525 (NPY06_16525) | 3334081..3334224 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3334592..3334737 | + | 146 | - | - | Antitoxin |
| - | 3334599..3334701 | - | 103 | - | - | Toxin |
| NPY06_RS16530 (NPY06_16530) | 3334860..3335198 | - | 339 | WP_002911404.1 | YebY family protein | - |
| NPY06_RS16535 (NPY06_16535) | 3335215..3336084 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NPY06_RS16540 (NPY06_16540) | 3336088..3336462 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NPY06_RS16545 (NPY06_16545) | 3336575..3336805 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NPY06_RS16550 (NPY06_16550) | 3336884..3337543 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NPY06_RS16555 (NPY06_16555) | 3337547..3339607 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T264531 NZ_CP110936:c3334701-3334599 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT264531 NZ_CP110936:3334592-3334737 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
