Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2812361..2812502 | Replicon | chromosome |
| Accession | NZ_CP110894 | ||
| Organism | Citrobacter freundii strain CF1807 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2812364..2812467 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2812361..2812502 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQW59_RS16560 | 2807561..2807899 | + | 339 | WP_265868250.1 | hypothetical protein | - |
| OQW59_RS16565 | 2807899..2808237 | + | 339 | WP_233605546.1 | Rrf2 family transcriptional regulator | - |
| OQW59_RS16570 | 2808379..2810850 | + | 2472 | WP_265868254.1 | 3'-5' exoribonuclease | - |
| OQW59_RS16575 | 2810914..2811174 | + | 261 | WP_072211989.1 | excisionase | - |
| OQW59_RS16580 | 2811152..2812231 | + | 1080 | WP_265868256.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2812361..2812502 | + | 142 | - | - | Antitoxin |
| - | 2812364..2812467 | - | 104 | - | - | Toxin |
| OQW59_RS16585 | 2812623..2812961 | - | 339 | WP_003034934.1 | YebY family protein | - |
| OQW59_RS16590 | 2812982..2813854 | - | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| OQW59_RS16595 | 2813858..2814232 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| OQW59_RS16600 | 2814376..2814606 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| OQW59_RS16605 | 2814713..2815369 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| OQW59_RS16610 | 2815393..2816055 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2756065..2818124 | 62059 | |
| - | inside | Prophage | - | - | 2756065..2819706 | 63641 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264472 NZ_CP110894:c2812467-2812364 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT264472 NZ_CP110894:2812361-2812502 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
