Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4453446..4453528 | Replicon | chromosome |
| Accession | NZ_CP110887 | ||
| Organism | Dickeya solani strain DsR207 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4453448..4453528 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4453446..4453528 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQ522_RS19450 (OQ522_10200) | 4449310..4450407 | - | 1098 | WP_022633455.1 | HDOD domain-containing protein | - |
| OQ522_RS19455 (OQ522_10205) | 4450398..4451513 | - | 1116 | WP_022633456.1 | ATP-binding protein | - |
| OQ522_RS19460 (OQ522_10210) | 4451506..4452630 | - | 1125 | WP_022633457.1 | FIST N-terminal domain-containing protein | - |
| OQ522_RS19465 (OQ522_10215) | 4452997..4453227 | + | 231 | WP_198560147.1 | aminopeptidase | - |
| - | 4453446..4453528 | + | 83 | - | - | Antitoxin |
| - | 4453448..4453528 | - | 81 | - | - | Toxin |
| OQ522_RS19470 (OQ522_10220) | 4453698..4454036 | - | 339 | WP_022633458.1 | YebY family protein | - |
| OQ522_RS19475 (OQ522_10225) | 4454582..4454998 | + | 417 | WP_223849459.1 | hypothetical protein | - |
| OQ522_RS19480 (OQ522_10230) | 4455350..4455598 | + | 249 | WP_022633460.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| OQ522_RS19485 (OQ522_10235) | 4455715..4457457 | - | 1743 | WP_022633461.1 | ABC transporter permease subunit | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 4447192..4455598 | 8406 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T264451 NZ_CP110887:c4453528-4453448 [Dickeya solani]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT264451 NZ_CP110887:4453446-4453528 [Dickeya solani]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
