264431

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 2894527..2895205 Replicon chromosome
Accession NZ_CP110886
Organism Dickeya solani strain DsR34

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag OQ520_RS12700 Protein ID WP_023637601.1
Coordinates 2894774..2895205 (+) Length 144 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID A0A2K8QSU7
Locus tag OQ520_RS12695 Protein ID WP_023637600.1
Coordinates 2894527..2894793 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OQ520_RS12675 (OQ520_03430) 2890977..2891627 + 651 WP_022632163.1 LysE family translocator -
OQ520_RS12680 (OQ520_03435) 2891698..2892306 - 609 WP_022632164.1 HD domain-containing protein -
OQ520_RS12685 (OQ520_03440) 2892516..2893166 + 651 WP_022632165.1 hemolysin III family protein -
OQ520_RS12690 (OQ520_03445) 2893240..2894220 - 981 WP_022632166.1 tRNA-modifying protein YgfZ -
OQ520_RS12695 (OQ520_03450) 2894527..2894793 + 267 WP_023637600.1 FAD assembly factor SdhE Antitoxin
OQ520_RS12700 (OQ520_03455) 2894774..2895205 + 432 WP_023637601.1 protein YgfX Toxin
OQ520_RS12705 (OQ520_03460) 2895305..2895823 - 519 WP_022632169.1 flavodoxin FldB -
OQ520_RS12710 (OQ520_03465) 2895952..2897277 - 1326 WP_022632170.1 MFS transporter -
OQ520_RS12715 (OQ520_03470) 2897540..2898439 + 900 WP_022632171.1 site-specific tyrosine recombinase XerD -
OQ520_RS12720 (OQ520_03475) 2898529..2899236 + 708 WP_022632172.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(2-132)

Antitoxin

Flavinator of succinate dehydrogenase

(8-79)


Sequences

Toxin        


Download         Length: 144 a.a.        Molecular weight: 16808.51 Da        Isoelectric Point: 11.7737

>T264431 WP_023637601.1 NZ_CP110886:2894774-2895205 [Dickeya solani]
VAQWQCDLRVSWRMQLFSLLTHGFLVLMILLAPWPDGYAPLWLGLVTLVVFGFVRSQRIIKSRQGEISLHGENQLHWQQR
DWQIARRPWVMRNGVLLSLRATTGKGHQRLWLASDSMGNEEWRLLRQLLQQHPLQGTESSRHH

Download         Length: 432 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10544.03 Da        Isoelectric Point: 5.5535

>AT264431 WP_023637600.1 NZ_CP110886:2894527-2894793 [Dickeya solani]
MDINNKSRIHWACRRGMRELDISIMPFFEHEYDTLSDDDKQHFIRLLQCDDPDLFNWLMNHGEPVDPELKRMVSLIQTRN
KDRGPVAM

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A2K8QSU7

References