Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 490090..490685 Replicon chromosome
Accession NZ_CP110873
Organism Enterobacter kobei strain SCLZS19

Toxin (Protein)


Gene name chpB Uniprot ID -
Locus tag OQE50_RS02380 Protein ID WP_032637645.1
Coordinates 490335..490685 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID -
Locus tag OQE50_RS02375 Protein ID WP_047027141.1
Coordinates 490090..490341 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OQE50_RS02365 (485757) 485757..489533 + 3777 WP_179120454.1 autotransporter assembly complex protein TamB -
OQE50_RS02370 (489536) 489536..489880 + 345 WP_014882267.1 gamma-glutamylcyclotransferase -
OQE50_RS02375 (490090) 490090..490341 + 252 WP_047027141.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
OQE50_RS02380 (490335) 490335..490685 + 351 WP_032637645.1 type II toxin-antitoxin system ChpB family toxin Toxin
OQE50_RS02385 (490763) 490763..491293 - 531 WP_008501423.1 inorganic diphosphatase -
OQE50_RS02390 (491603) 491603..492559 + 957 WP_047626912.1 galactofuranose ABC transporter substrate-binding protein YtfQ -
OQE50_RS02395 (492662) 492662..494164 + 1503 WP_045134407.1 sugar ABC transporter ATP-binding protein -
OQE50_RS02400 (494175) 494175..495200 + 1026 WP_014882273.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-114)

Antitoxin

Antitoxin PemI-like

(1-83)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12354.33 Da        Isoelectric Point: 6.9493

>T264412 WP_032637645.1 NZ_CP110873:490335-490685 [Enterobacter kobei]
MVKRPCFERGDIVLVGFDPANGHEQKGAGRPALVLSVSAFNQLGMTLVAPVTQGGNFARYAGFSVPLSCEEGNIQGVILV
NQIRMMDLGARLAKRIGVASDETVEDALLRLQAILS

Download         Length: 351 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9060.41 Da        Isoelectric Point: 4.2517

>AT264412 WP_047027141.1 NZ_CP110873:490090-490341 [Enterobacter kobei]
MRITIKKWGNSAGMVIPGVVMKELGLKPGQSMEAQVTNNQLVLTPVSKQYSLEELLAQCDMSAPEINEQDVWGTSGPVGD
EVW

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References