Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2773804..2774013 | Replicon | chromosome |
| Accession | NZ_CP110857 | ||
| Organism | Enterobacter hormaechei strain K432 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2773817..2773920 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2773804..2774013 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQO37_RS13320 (OQO37_13320) | 2770072..2771520 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OQO37_RS13325 (OQO37_13325) | 2771627..2771866 | + | 240 | WP_003859885.1 | YebV family protein | - |
| OQO37_RS13330 (OQO37_13330) | 2771901..2772545 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| OQO37_RS13335 (OQO37_13335) | 2772713..2773693 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| OQO37_RS13340 (OQO37_13340) | 2773739..2773936 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2773804..2774013 | + | 210 | - | - | Antitoxin |
| - | 2773817..2773920 | - | 104 | - | - | Toxin |
| OQO37_RS13345 (OQO37_13345) | 2774062..2774400 | - | 339 | WP_003859787.1 | YebY family protein | - |
| OQO37_RS13350 (OQO37_13350) | 2774417..2775286 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| OQO37_RS13355 (OQO37_13355) | 2775288..2775659 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| OQO37_RS13360 (OQO37_13360) | 2775797..2776027 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| OQO37_RS13365 (OQO37_13365) | 2776139..2776789 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| OQO37_RS13370 (OQO37_13370) | 2776814..2777476 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264378 NZ_CP110857:c2773920-2773817 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT264378 NZ_CP110857:2773804-2774013 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
