Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2743064..2743209 | Replicon | chromosome |
| Accession | NZ_CP110823 | ||
| Organism | Enterobacter roggenkampii strain WS22-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2743071..2743174 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2743064..2743209 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM419_RS12900 (OM419_12895) | 2738285..2739727 | + | 1443 | WP_277737722.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OM419_RS12905 (OM419_12900) | 2739834..2740073 | + | 240 | WP_008500472.1 | YebV family protein | - |
| OM419_RS12910 (OM419_12905) | 2740108..2740752 | - | 645 | WP_023325510.1 | protein-serine/threonine phosphatase | - |
| OM419_RS12915 (OM419_12910) | 2740919..2741860 | + | 942 | WP_021240429.1 | VirK/YbjX family protein | - |
| OM419_RS12920 (OM419_12915) | 2742167..2742658 | - | 492 | WP_023293949.1 | hypothetical protein | - |
| - | 2743064..2743209 | + | 146 | - | - | Antitoxin |
| - | 2743071..2743174 | - | 104 | - | - | Toxin |
| OM419_RS12925 (OM419_12920) | 2743313..2743651 | - | 339 | WP_008500468.1 | YebY family protein | - |
| OM419_RS12930 (OM419_12925) | 2743668..2744537 | - | 870 | WP_135346445.1 | copper homeostasis membrane protein CopD | - |
| OM419_RS12935 (OM419_12930) | 2744539..2744910 | - | 372 | WP_219288685.1 | CopC domain-containing protein YobA | - |
| OM419_RS12940 (OM419_12935) | 2745048..2745278 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OM419_RS12945 (OM419_12940) | 2745389..2746039 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| OM419_RS12950 (OM419_12945) | 2746064..2746726 | + | 663 | WP_277737723.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264360 NZ_CP110823:c2743174-2743071 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT264360 NZ_CP110823:2743064-2743209 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
