Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 4318114..4318576 Replicon chromosome
Accession NZ_CP110807
Organism Pseudomonas syringae strain MUP17

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OQB66_RS18310 Protein ID WP_003319672.1
Coordinates 4318295..4318576 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A3M3EVK6
Locus tag OQB66_RS18305 Protein ID WP_003319671.1
Coordinates 4318114..4318305 (+) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OQB66_RS18285 (OQB66_18285) 4313191..4314453 - 1263 WP_266064603.1 MFS transporter -
OQB66_RS18290 (OQB66_18290) 4314560..4315453 + 894 WP_266064604.1 LysR family transcriptional regulator -
OQB66_RS18295 (OQB66_18295) 4315469..4316581 - 1113 WP_266064605.1 hypothetical protein -
OQB66_RS18300 (OQB66_18300) 4316741..4318051 + 1311 WP_266064607.1 mechanosensitive ion channel family protein -
OQB66_RS18305 (OQB66_18305) 4318114..4318305 + 192 WP_003319671.1 hypothetical protein Antitoxin
OQB66_RS18310 (OQB66_18310) 4318295..4318576 + 282 WP_003319672.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OQB66_RS18315 (OQB66_18315) 4318852..4320972 + 2121 WP_198721727.1 alpha/beta hydrolase domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4318114..4332951 14837
- inside Genomic island - - 4318114..4334554 16440


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10523.23 Da        Isoelectric Point: 9.7426

>T264277 WP_003319672.1 NZ_CP110807:4318295-4318576 [Pseudomonas syringae]
MLVEWRPAARMNLKQILSYIADRNIRAASELGMAIEVATSALPQHPYLYRHGRVPGTREIVVHPNYLVVYKVTDRIEVLA
VLHARQAYPTDAG

Download         Length: 282 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7007.75 Da        Isoelectric Point: 4.2322

>AT264277 WP_003319671.1 NZ_CP110807:4318114-4318305 [Pseudomonas syringae]
MSARISPIVSEFETEEQAASYDKWFRAQVQASINDPAPNISHDQVMAEMRALLESKQPPSDAS

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A3M3EVK6

References