Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2504247..2504371 | Replicon | chromosome |
| Accession | NZ_CP110791 | ||
| Organism | Yersinia sp. SCPM-O-B-9106 (C-191) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2504255..2504347 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2504247..2504371 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OP863_RS11545 (OP863_11545) | 2499277..2499813 | + | 537 | WP_265525310.1 | hypothetical protein | - |
| OP863_RS11550 (OP863_11550) | 2500088..2500948 | + | 861 | WP_265525311.1 | hypothetical protein | - |
| OP863_RS11555 (OP863_11555) | 2500941..2501285 | + | 345 | WP_265525312.1 | hypothetical protein | - |
| OP863_RS11560 (OP863_11560) | 2501437..2502039 | + | 603 | WP_265525313.1 | hypothetical protein | - |
| OP863_RS11565 (OP863_11565) | 2502039..2502239 | + | 201 | WP_145551605.1 | hypothetical protein | - |
| OP863_RS11570 (OP863_11570) | 2502256..2502678 | - | 423 | WP_265525314.1 | GNAT family N-acetyltransferase | - |
| OP863_RS11575 (OP863_11575) | 2502826..2503095 | + | 270 | WP_265525315.1 | excisionase | - |
| OP863_RS11580 (OP863_11580) | 2503070..2504179 | + | 1110 | WP_265525316.1 | tyrosine-type recombinase/integrase | - |
| - | 2504247..2504371 | + | 125 | - | - | Antitoxin |
| - | 2504255..2504347 | - | 93 | - | - | Toxin |
| OP863_RS11585 (OP863_11585) | 2504521..2504862 | - | 342 | WP_038632445.1 | YebY family protein | - |
| OP863_RS11590 (OP863_11590) | 2504959..2505843 | - | 885 | WP_265525317.1 | copper homeostasis membrane protein CopD | - |
| OP863_RS11595 (OP863_11595) | 2505845..2506231 | - | 387 | WP_145509676.1 | CopC domain-containing protein YobA | - |
| OP863_RS11600 (OP863_11600) | 2506622..2507131 | - | 510 | WP_038632439.1 | non-heme ferritin | - |
| OP863_RS11605 (OP863_11605) | 2507525..2507758 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| OP863_RS11610 (OP863_11610) | 2507808..2508764 | - | 957 | WP_038632429.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2440411..2509942 | 69531 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 bp
>T264258 NZ_CP110791:c2504347-2504255 [Yersinia sp. SCPM-O-B-9106 (C-191)]
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTCTTTTT
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTCTTTTT
Antitoxin
Download Length: 125 bp
>AT264258 NZ_CP110791:2504247-2504371 [Yersinia sp. SCPM-O-B-9106 (C-191)]
AACAAGTTAAAAAGAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAACGTAGGCTTACTCAGCCATACTCTTTAAGAATAG
AACAAGTTAAAAAGAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAACGTAGGCTTACTCAGCCATACTCTTTAAGAATAG
