Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172605..2172724 | Replicon | chromosome |
| Accession | NZ_CP110790 | ||
| Organism | Yersinia massiliensis strain SCPM-O-B-8026 (C-146) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172624..2172716 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172605..2172724 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OP862_RS09745 (OP862_09745) | 2167769..2167921 | - | 153 | WP_155410999.1 | hypothetical protein | - |
| OP862_RS09750 (OP862_09750) | 2168204..2169160 | + | 957 | WP_050285736.1 | prolyl aminopeptidase | - |
| OP862_RS09755 (OP862_09755) | 2169206..2169439 | - | 234 | WP_050285735.1 | DNA polymerase III subunit theta | - |
| OP862_RS09760 (OP862_09760) | 2169833..2170342 | + | 510 | WP_019210237.1 | non-heme ferritin | - |
| OP862_RS09765 (OP862_09765) | 2170736..2171122 | + | 387 | WP_050080589.1 | CopC domain-containing protein YobA | - |
| OP862_RS09770 (OP862_09770) | 2171124..2172008 | + | 885 | WP_050285734.1 | copper homeostasis membrane protein CopD | - |
| OP862_RS09775 (OP862_09775) | 2172106..2172447 | + | 342 | WP_050080591.1 | YebY family protein | - |
| - | 2172605..2172724 | - | 120 | - | - | Antitoxin |
| - | 2172624..2172716 | + | 93 | - | - | Toxin |
| OP862_RS09780 (OP862_09780) | 2172792..2173901 | - | 1110 | WP_167311278.1 | tyrosine-type recombinase/integrase | - |
| OP862_RS09785 (OP862_09785) | 2173876..2174145 | - | 270 | WP_050074132.1 | excisionase | - |
| OP862_RS09790 (OP862_09790) | 2174252..2174620 | - | 369 | WP_167311277.1 | hypothetical protein | - |
| OP862_RS09795 (OP862_09795) | 2174790..2175053 | - | 264 | Protein_1923 | DUF550 domain-containing protein | - |
| OP862_RS09800 (OP862_09800) | 2175680..2176534 | - | 855 | WP_167311218.1 | hypothetical protein | - |
| OP862_RS09805 (OP862_09805) | 2176814..2177338 | - | 525 | WP_167311276.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2167026..2229178 | 62152 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 bp
>T264246 NZ_CP110790:2172624-2172716 [Yersinia massiliensis]
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTTTTTTT
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTTTTTTT
Antitoxin
Download Length: 120 bp
>AT264246 NZ_CP110790:c2172724-2172605 [Yersinia massiliensis]
AACACGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAACGTAGGCTTACTCAGCCGTACCCTTTAAG
AACACGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAACGTAGGCTTACTCAGCCGTACCCTTTAAG
