Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/PIN(toxin) |
Location | 1932285..1932877 | Replicon | chromosome |
Accession | NC_017277 | ||
Organism | Synechocystis sp. PCC 6803 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | SYNGTS_RS09150 | Protein ID | WP_010872957.1 |
Coordinates | 1932285..1932671 (-) | Length | 129 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | - |
Locus tag | SYNGTS_RS09155 | Protein ID | WP_010872958.1 |
Coordinates | 1932671..1932877 (-) | Length | 69 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SYNGTS_RS09140 | 1929956..1931128 | + | 1173 | WP_010872955.1 | sulfate adenylyltransferase | - |
SYNGTS_RS09145 | 1931171..1932235 | + | 1065 | WP_010872956.1 | glycosyltransferase | - |
SYNGTS_RS09150 | 1932285..1932671 | - | 387 | WP_010872957.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
SYNGTS_RS09155 | 1932671..1932877 | - | 207 | WP_010872958.1 | DUF2281 domain-containing protein | Antitoxin |
SYNGTS_RS09160 | 1933124..1934347 | - | 1224 | WP_010872959.1 | geranylgeranyl reductase | - |
SYNGTS_RS09165 | 1934729..1935886 | + | 1158 | WP_010872960.1 | oxidoreductase | - |
SYNGTS_RS09170 | 1935903..1936214 | + | 312 | WP_010872961.1 | DUF433 domain-containing protein | - |
SYNGTS_RS09175 | 1936291..1937127 | + | 837 | WP_010872962.1 | DUF1049 domain-containing protein | - |
SYNGTS_RS09180 | 1937246..1937599 | + | 354 | WP_010872963.1 | TMEM165/GDT1 family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 129 a.a. Molecular weight: 14814.14 Da Isoelectric Point: 6.0713
>T26424 WP_010872957.1 NC_017277:c1932671-1932285 [Synechocystis sp. PCC 6803]
MNSVLIDTHVFIWLAEDDSNLPVTTKDTLENMDNVFVSIASFWEISIKLKIGKLSLCGDFNSIEASFQRTRFKLLPITLK
DTIKLYNLPLHHKDPFDRILVSQSINHSLILVSRDQALDDYPIQRLWL
MNSVLIDTHVFIWLAEDDSNLPVTTKDTLENMDNVFVSIASFWEISIKLKIGKLSLCGDFNSIEASFQRTRFKLLPITLK
DTIKLYNLPLHHKDPFDRILVSQSINHSLILVSRDQALDDYPIQRLWL
Download Length: 387 bp
>T26424 NC_017277:c1932671-1932285 [Synechocystis sp. PCC 6803]
ATGAATTCTGTTTTGATAGACACCCACGTTTTTATTTGGTTAGCAGAAGATGACTCTAACTTGCCTGTGACGACAAAAGA
TACCTTAGAAAATATGGATAACGTTTTTGTTAGTATTGCCAGCTTTTGGGAAATTTCTATTAAACTAAAAATTGGTAAAC
TTTCTCTCTGTGGTGATTTCAATAGTATTGAAGCTAGTTTTCAAAGAACCCGATTCAAGCTATTACCTATTACACTAAAA
GACACAATTAAACTTTATAATCTTCCCTTGCACCACAAAGATCCCTTTGATCGTATTTTGGTATCCCAATCGATTAATCA
TTCTCTTATTTTAGTCAGTCGTGATCAAGCTCTGGATGATTATCCGATTCAACGCCTGTGGTTGTAG
ATGAATTCTGTTTTGATAGACACCCACGTTTTTATTTGGTTAGCAGAAGATGACTCTAACTTGCCTGTGACGACAAAAGA
TACCTTAGAAAATATGGATAACGTTTTTGTTAGTATTGCCAGCTTTTGGGAAATTTCTATTAAACTAAAAATTGGTAAAC
TTTCTCTCTGTGGTGATTTCAATAGTATTGAAGCTAGTTTTCAAAGAACCCGATTCAAGCTATTACCTATTACACTAAAA
GACACAATTAAACTTTATAATCTTCCCTTGCACCACAAAGATCCCTTTGATCGTATTTTGGTATCCCAATCGATTAATCA
TTCTCTTATTTTAGTCAGTCGTGATCAAGCTCTGGATGATTATCCGATTCAACGCCTGTGGTTGTAG
Antitoxin
Download Length: 69 a.a. Molecular weight: 7699.84 Da Isoelectric Point: 3.8804
>AT26424 WP_010872958.1 NC_017277:c1932877-1932671 [Synechocystis sp. PCC 6803]
MTTEAALLNIAENLPDDLKIELLHYAEYLMNKSLNAPQKPLAGSMKGTFILPLPEDFDAPLEEFEEYM
MTTEAALLNIAENLPDDLKIELLHYAEYLMNKSLNAPQKPLAGSMKGTFILPLPEDFDAPLEEFEEYM
Download Length: 207 bp
>AT26424 NC_017277:c1932877-1932671 [Synechocystis sp. PCC 6803]
ATGACTACTGAAGCTGCCCTATTAAACATTGCTGAAAATCTGCCTGATGACTTAAAAATCGAGCTTTTACACTATGCTGA
ATATTTAATGAATAAATCCTTAAATGCGCCCCAAAAGCCATTAGCAGGATCGATGAAAGGAACTTTTATTTTACCTCTAC
CCGAAGACTTTGATGCCCCCTTAGAAGAATTTGAGGAGTATATGTAA
ATGACTACTGAAGCTGCCCTATTAAACATTGCTGAAAATCTGCCTGATGACTTAAAAATCGAGCTTTTACACTATGCTGA
ATATTTAATGAATAAATCCTTAAATGCGCCCCAAAAGCCATTAGCAGGATCGATGAAAGGAACTTTTATTTTACCTCTAC
CCGAAGACTTTGATGCCCCCTTAGAAGAATTTGAGGAGTATATGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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