Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992824..1992915 | Replicon | chromosome |
| Accession | NZ_CP110789 | ||
| Organism | Yersinia intermedia strain SCPM-O-B-10209 (333) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1992824..1992907 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992824..1992915 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OP861_RS08800 (OP861_08800) | 1988399..1989355 | + | 957 | WP_050085883.1 | prolyl aminopeptidase | - |
| OP861_RS08805 (OP861_08805) | 1989416..1989646 | - | 231 | WP_050085884.1 | DNA polymerase III subunit theta | - |
| OP861_RS08810 (OP861_08810) | 1990037..1990540 | + | 504 | WP_005183013.1 | non-heme ferritin | - |
| OP861_RS08815 (OP861_08815) | 1990928..1991314 | + | 387 | WP_005183010.1 | CopC domain-containing protein YobA | - |
| OP861_RS08820 (OP861_08820) | 1991316..1992200 | + | 885 | WP_050085885.1 | copper homeostasis membrane protein CopD | - |
| OP861_RS08825 (OP861_08825) | 1992297..1992638 | + | 342 | WP_005183006.1 | YebY family protein | - |
| - | 1992824..1992907 | + | 84 | - | - | Toxin |
| - | 1992824..1992915 | - | 92 | - | - | Antitoxin |
| OP861_RS08830 (OP861_08830) | 1992986..1994068 | - | 1083 | WP_265535786.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| OP861_RS08835 (OP861_08835) | 1994043..1994309 | - | 267 | WP_265535787.1 | excisionase | - |
| OP861_RS08840 (OP861_08840) | 1994382..1994894 | - | 513 | WP_265535788.1 | siphovirus Gp157 family protein | - |
| OP861_RS08845 (OP861_08845) | 1994891..1997044 | - | 2154 | WP_265535789.1 | hypothetical protein | - |
| OP861_RS08850 (OP861_08850) | 1997058..1997330 | - | 273 | WP_265535790.1 | hypothetical protein | - |
| OP861_RS08855 (OP861_08855) | 1997561..1997893 | - | 333 | WP_138775176.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | allB / allC / allD / flmH | 1771624..2036710 | 265086 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 bp
>T264234 NZ_CP110789:1992824-1992907 [Yersinia intermedia]
ATTAATGCCAACTTTTAGCGCACGGCTCTGTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTT
TTTT
ATTAATGCCAACTTTTAGCGCACGGCTCTGTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTT
TTTT
Antitoxin
Download Length: 92 bp
>AT264234 NZ_CP110789:c1992915-1992824 [Yersinia intermedia]
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGACAGAGCCGTGCGCTAAAA
GTTGGCATTAAT
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGACAGAGCCGTGCGCTAAAA
GTTGGCATTAAT
