Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1122590..1122733 | Replicon | chromosome |
| Accession | NZ_CP110775 | ||
| Organism | Citrobacter freundii strain Cf-Emp | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1122595..1122698 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1122590..1122733 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OPR78_RS05750 | 1119747..1121168 | + | 1422 | WP_071681312.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OPR78_RS05755 | 1121269..1121505 | + | 237 | WP_029139506.1 | YebV family protein | - |
| OPR78_RS05760 | 1121608..1121799 | + | 192 | WP_003034941.1 | YebW family protein | - |
| OPR78_RS05765 | 1121800..1122441 | - | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| - | 1122590..1122733 | + | 144 | - | - | Antitoxin |
| - | 1122595..1122698 | - | 104 | - | - | Toxin |
| OPR78_RS05770 | 1122854..1123192 | - | 339 | WP_044700293.1 | YebY family protein | - |
| OPR78_RS05775 | 1123213..1124085 | - | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| OPR78_RS05780 | 1124089..1124463 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| OPR78_RS05785 | 1124607..1124837 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| OPR78_RS05790 | 1124944..1125600 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| OPR78_RS05795 | 1125624..1126286 | + | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264201 NZ_CP110775:c1122698-1122595 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT264201 NZ_CP110775:1122590-1122733 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
