Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2368248..2368393 | Replicon | chromosome |
| Accession | NZ_CP110661 | ||
| Organism | Klebsiella pneumoniae strain B431 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2368255..2368357 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2368248..2368393 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OOS97_RS11585 | 2363779..2365212 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OOS97_RS11590 | 2365328..2365567 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OOS97_RS11595 | 2365665..2365856 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OOS97_RS11600 | 2365853..2366506 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| OOS97_RS11605 | 2366663..2367631 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OOS97_RS11610 | 2367736..2367879 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2368248..2368393 | + | 146 | - | - | Antitoxin |
| - | 2368255..2368357 | - | 103 | - | - | Toxin |
| OOS97_RS11615 | 2368516..2368854 | - | 339 | WP_009307539.1 | YebY family protein | - |
| OOS97_RS11620 | 2368871..2369740 | - | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| OOS97_RS11625 | 2369744..2370118 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OOS97_RS11630 | 2370231..2370461 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OOS97_RS11635 | 2370540..2371199 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OOS97_RS11640 | 2371203..2373263 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T264103 NZ_CP110661:c2368357-2368255 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT264103 NZ_CP110661:2368248-2368393 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
