Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 39593..39737 | Replicon | chromosome |
| Accession | NZ_CP110657 | ||
| Organism | Salmonella enterica subsp. enterica strain S2122 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 39594..39697 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 39593..39737 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OOK64_RS00280 | 36792..37601 | + | 810 | WP_052929117.1 | recombination protein RecT | - |
| OOK64_RS00285 | 37658..37852 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| OOK64_RS00290 | 37845..38033 | + | 189 | WP_052929118.1 | DUF1187 family protein | - |
| - | 37851..38027 | - | 177 | NuclAT_0 | - | - |
| - | 37851..38027 | - | 177 | NuclAT_0 | - | - |
| - | 37851..38027 | - | 177 | NuclAT_0 | - | - |
| - | 37851..38027 | - | 177 | NuclAT_0 | - | - |
| OOK64_RS00295 | 38140..38421 | + | 282 | WP_023234152.1 | excisionase | - |
| OOK64_RS00300 | 38387..39463 | + | 1077 | WP_001189085.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 39593..39737 | + | 145 | - | - | Antitoxin |
| - | 39594..39697 | - | 104 | - | - | Toxin |
| OOK64_RS00305 | 39837..40190 | - | 354 | WP_000722368.1 | YebY family protein | - |
| OOK64_RS00310 | 40207..41082 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| OOK64_RS00315 | 41083..41457 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| OOK64_RS00320 | 41595..41825 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| OOK64_RS00325 | 41933..42589 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| OOK64_RS00330 | 42613..43311 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 337..45397 | 45060 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T264083 NZ_CP110657:c39697-39594 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 145 bp
>AT264083 NZ_CP110657:39593-39737 [Salmonella enterica subsp. enterica]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
