26408

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 3886601..3887934 Replicon chromosome
Accession NC_017267
Organism Xanthomonas oryzae pv. oryzicola BLS256

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag XOC_RS25525 Protein ID WP_014504558.1
Coordinates 3886601..3886867 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag XOC_RS16780 Protein ID WP_041183453.1
Coordinates 3886864..3887934 (+) Length 357 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XOC_RS16755 (XOC_3763) 3882172..3882822 + 651 WP_041183451.1 SGNH/GDSL hydrolase family protein -
XOC_RS16760 (XOC_3764) 3883145..3883816 + 672 WP_024745633.1 class I SAM-dependent methyltransferase -
XOC_RS16765 (XOC_3765) 3884120..3884911 - 792 WP_024710587.1 polysaccharide deacetylase family protein -
XOC_RS16770 (XOC_3766) 3884957..3885883 + 927 WP_014504556.1 Grx4 family monothiol glutaredoxin -
XOC_RS25520 (XOC_3767) 3886253..3886564 + 312 WP_082350419.1 DUF4433 domain-containing protein -
XOC_RS25525 (XOC_3768) 3886601..3886867 + 267 WP_014504558.1 DUF4433 domain-containing protein Toxin
XOC_RS16780 (XOC_3769) 3886864..3887934 + 1071 WP_041183453.1 macro domain-containing protein Antitoxin
XOC_RS16785 (XOC_3770) 3888043..3888603 - 561 WP_014504560.1 DUF924 family protein -
XOC_RS16790 (XOC_3771) 3888743..3890152 + 1410 WP_014504561.1 amidohydrolase -
XOC_RS16795 (XOC_3772) 3890149..3891429 + 1281 WP_014504562.1 amidohydrolase family protein -
XOC_RS16800 (XOC_3773) 3891733..3892059 + 327 WP_041183782.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(2-87)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10477.88 Da        Isoelectric Point: 7.3579

>T26408 WP_014504558.1 NC_017267:3886601-3886867 [Xanthomonas oryzae pv. oryzicola BLS256]
MASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHVPLDGLRGIVCHTDGLKQTIERQLQERNLKLPVH
TRTGWYFR

Download         Length: 267 bp

>T26408 NC_017267:3886601-3886867 [Xanthomonas oryzae pv. oryzicola BLS256]
TTGGCGAGCTTCTATTCCGATTTATCTGATCTCGACAAGATCGACTGGCCGTTGCTGCAAGCACGCGATTTCCGGCGCGA
CCCAGACGACCCAGCCAAGTTCGAGCGCTATCAGGCCGAGGCCCTGATTCACCGACACGTGCCGCTTGATGGCCTGCGCG
GCATTGTGTGTCATACGGATGGTTTGAAACAGACCATCGAGCGGCAACTCCAAGAGCGAAACCTGAAATTGCCGGTTCAT
ACCCGCACCGGGTGGTATTTCCGATGA

Antitoxin


Download         Length: 357 a.a.        Molecular weight: 40018.97 Da        Isoelectric Point: 5.7473

>AT26408 WP_041183453.1 NC_017267:3886864-3887934 [Xanthomonas oryzae pv. oryzicola BLS256]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLSENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLAGLDTDILVFEPTLKYQNVAKRSG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERNIERAGLPELDLRFSAHKYGPYADRLRHLLNGLDGSYLHCD
KRISDADPLDVIWFDDNRKSFVQTYLKSEAKQYIPALEATAALIDGFESPFGMELLATVDWLIVQEGISAQVADVREGIR
HWPGDQEAAARKDRLFDDRALGIALKRLASGAIAVA

Download         Length: 1071 bp

>AT26408 NC_017267:3886864-3887934 [Xanthomonas oryzae pv. oryzicola BLS256]
ATGATCACGTTCACACAAGGCAATCTACTGGAGTCTGGCGCAGAGGCGCTGGTCAACACCGTCAACACCGTCGGCGTGAT
GGGCAAGGGCATCGCGCTGATGTTCAAGGAGCGCTTCAAGGAGAACTTCCTCCGATATGCCGCCGCCTGCAAAGACAACC
AAGTGCGCATTGGCAAAATTTTCGTCACCGAAGTCAACGAACTGGACGGGCCACGCTGGATCATCAATTTTCCGACCAAA
CAGCACTGGCGTGGCGATTCCCGCATCGAATGGATCACTGAAGGATTGCAGGACTTGCACCGTTTTCTGAGCGAGAACAA
AGTCAAATCCATTGCCATCCCGCCACTGGGCGCGGGCAATGGAGGATTGGACTGGGCCGAGGTGCGCCCACTGATCGAAG
AAGTACTAGCAGGTTTGGATACAGACATCCTCGTGTTCGAGCCTACCTTGAAGTATCAGAACGTTGCCAAGCGCTCCGGC
GTGGAAAAATTGACCCCGGCACGCGCCTTGATTGCCGAGCTGGTACGTCGTTACTGGGTGCTAGGTATGGAATGCAGCCT
GTTGGAAATCCAGAAACTGGCGTGGTTCCTTGAACGCAACATCGAGCGAGCGGGCTTGCCTGAGCTTGATTTGCGCTTTT
CAGCACACAAGTACGGCCCTTATGCCGACCGTCTACGCCATCTTCTGAACGGGCTGGACGGAAGCTACCTGCATTGTGAC
AAACGGATCAGCGACGCCGACCCGCTGGACGTGATCTGGTTCGACGACAATCGCAAAAGTTTCGTACAGACCTACCTAAA
GAGCGAGGCGAAACAGTACATTCCAGCACTGGAAGCTACTGCCGCCTTGATCGATGGTTTTGAATCTCCTTTTGGCATGG
AGTTGTTGGCGACAGTTGACTGGCTGATTGTGCAGGAAGGTATCTCTGCGCAAGTTGCCGACGTGCGTGAAGGCATACGC
CACTGGCCAGGTGATCAGGAGGCAGCGGCGCGAAAGGACAGACTGTTCGATGACCGCGCCTTGGGGATCGCGCTGAAACG
ACTGGCATCAGGTGCAATCGCAGTGGCTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References