Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1994313..1994458 | Replicon | chromosome |
| Accession | NZ_CP110638 | ||
| Organism | Klebsiella pneumoniae strain K201054 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1994349..1994451 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1994313..1994458 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO068_RS10775 | 1989443..1991503 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OO068_RS10780 | 1991507..1992166 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OO068_RS10785 | 1992245..1992475 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OO068_RS10790 | 1992588..1992962 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OO068_RS10795 | 1992966..1993835 | + | 870 | WP_048331959.1 | copper homeostasis membrane protein CopD | - |
| OO068_RS10800 | 1993852..1994190 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1994313..1994458 | - | 146 | - | - | Antitoxin |
| - | 1994349..1994451 | + | 103 | - | - | Toxin |
| OO068_RS10805 | 1994827..1994970 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OO068_RS10810 | 1995075..1996043 | - | 969 | WP_074185275.1 | VirK/YbjX family protein | - |
| OO068_RS10815 | 1996200..1996853 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| OO068_RS10820 | 1996850..1997041 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OO068_RS10825 | 1997139..1997378 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OO068_RS10830 | 1997494..1998927 | - | 1434 | WP_258785491.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T264058 NZ_CP110638:1994349-1994451 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT264058 NZ_CP110638:c1994458-1994313 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
