Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-RelB
Location 4046797..4047314 Replicon chromosome
Accession NZ_CP110629
Organism Marinimicrobium sp. C6131

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag OOT55_RS17040 Protein ID WP_265367030.1
Coordinates 4046797..4047066 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag OOT55_RS17045 Protein ID WP_024462286.1
Coordinates 4047063..4047314 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OOT55_RS17025 (OOT55_17025) 4042621..4044327 - 1707 WP_265367027.1 DUF5666 domain-containing protein -
OOT55_RS17030 (OOT55_17030) 4044496..4045275 - 780 WP_265367028.1 hypothetical protein -
OOT55_RS17035 (OOT55_17035) 4045369..4046793 + 1425 WP_265367029.1 GTPase domain-containing protein -
OOT55_RS17040 (OOT55_17040) 4046797..4047066 - 270 WP_265367030.1 Txe/YoeB family addiction module toxin Toxin
OOT55_RS17045 (OOT55_17045) 4047063..4047314 - 252 WP_024462286.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
OOT55_RS17050 (OOT55_17050) 4048053..4048907 - 855 WP_265367031.1 hypothetical protein -
OOT55_RS17055 (OOT55_17055) 4049182..4049397 + 216 WP_265367032.1 AlpA family transcriptional regulator -
OOT55_RS17060 (OOT55_17060) 4049617..4050195 + 579 WP_265367033.1 AHH domain-containing protein -
OOT55_RS17065 (OOT55_17065) 4050255..4050773 + 519 WP_265367034.1 hypothetical protein -
OOT55_RS17070 (OOT55_17070) 4051118..4051816 + 699 WP_265367035.1 inovirus-type Gp2 protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10599.20 Da        Isoelectric Point: 9.9171

>T264035 WP_265367030.1 NZ_CP110629:c4047066-4046797 [Marinimicrobium sp. C6131]
MILAWTSTAWSEYEYWQGTDKKTVKRINKLIQETMRTPFDGSGKPEPLKHGLKGYWSRRIDREHRLVYKLKGEGPDATLL
IIQCRFHYE

Download         Length: 270 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9521.68 Da        Isoelectric Point: 4.5994

>AT264035 WP_024462286.1 NZ_CP110629:c4047314-4047063 [Marinimicrobium sp. C6131]
MDIINFSAFREKLASFMDRVNDDHAPVIIRRSKNRSAVLMSLEDFQSYEETSYLLSTPANARALQTSLEEAERGDIVQRN
LVE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References