Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-dinJ/YafQ-RelB
Location 2704801..2705332 Replicon chromosome
Accession NZ_CP110623
Organism Prosthecochloris sp. SCSIO W1101

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OO006_RS12535 Protein ID WP_265371447.1
Coordinates 2704801..2705082 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID -
Locus tag OO006_RS12540 Protein ID WP_265371448.1
Coordinates 2705069..2705332 (-) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OO006_RS12525 (OO006_12525) 2701693..2702946 - 1254 WP_265371445.1 glycosyltransferase -
OO006_RS12530 (OO006_12530) 2703655..2704377 - 723 WP_265371446.1 DUF169 domain-containing protein -
OO006_RS12535 (OO006_12535) 2704801..2705082 - 282 WP_265371447.1 type II toxin-antitoxin system YafQ family toxin Toxin
OO006_RS12540 (OO006_12540) 2705069..2705332 - 264 WP_265371448.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
OO006_RS12545 (OO006_12545) 2705528..2705878 - 351 WP_265371449.1 hypothetical protein -
OO006_RS12550 (OO006_12550) 2705875..2706141 - 267 WP_265371450.1 hypothetical protein -
OO006_RS12555 (OO006_12555) 2706601..2707092 - 492 WP_265371451.1 GNAT family N-acetyltransferase -
OO006_RS12560 (OO006_12560) 2707080..2707496 + 417 WP_265371452.1 hypothetical protein -
OO006_RS12565 (OO006_12565) 2707734..2708243 - 510 WP_265371453.1 N-acetyltransferase -
OO006_RS12570 (OO006_12570) 2708382..2708702 - 321 WP_265371454.1 type II toxin-antitoxin system RelE/ParE family toxin -
OO006_RS12575 (OO006_12575) 2708800..2709573 - 774 WP_265371455.1 class I SAM-dependent methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(2-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-83)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10905.74 Da        Isoelectric Point: 10.1873

>T264034 WP_265371447.1 NZ_CP110623:c2705082-2704801 [Prosthecochloris sp. SCSIO W1101]
MRTIKYTSKFKSDYKREQKGRHGKKLERLLKPVISLLVEDQALPKNLVDHPLSGRWKDCRDCHIKPDLVLIYRKPDDQNL
ELVRLGSHSELGL

Download         Length: 282 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9556.00 Da        Isoelectric Point: 4.6677

>AT264034 WP_265371448.1 NZ_CP110623:c2705332-2705069 [Prosthecochloris sp. SCSIO W1101]
MITKSVVRARIDQETKDEASAILAAMGLTMSDAVRLLMKKIVAEKALPFNPLIPNKETIQAIKESRAGETHTAGSVDELF
KELDEDD

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References