Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-dinJ/YafQ-RelB
Location 2704801..2705332 Replicon chromosome
Accession NZ_CP110623
Organism Prosthecochloris sp. SCSIO W1101

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OO006_RS12535 Protein ID WP_265371447.1
Coordinates 2704801..2705082 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID -
Locus tag OO006_RS12540 Protein ID WP_265371448.1
Coordinates 2705069..2705332 (-) Length 88 a.a.

Genomic Context

OO006_RS12560OO006_RS12525OO006_RS12530OO006_RS12535OO006_RS12540OO006_RS12545OO006_RS12550OO006_RS12555OO006_RS12565OO006_RS12570OO006_RS12575
Location: 2707080..2707496 (417 bp)
Type: Others
Protein ID: WP_265371452.1
Location: 2701693..2702946 (1254 bp)
Type: Others
Protein ID: WP_265371445.1
Location: 2703655..2704377 (723 bp)
Type: Others
Protein ID: WP_265371446.1
Location: 2704801..2705082 (282 bp)
Type: Toxin
Protein ID: WP_265371447.1
Location: 2705069..2705332 (264 bp)
Type: Antitoxin
Protein ID: WP_265371448.1
Location: 2705528..2705878 (351 bp)
Type: Others
Protein ID: WP_265371449.1
Location: 2705875..2706141 (267 bp)
Type: Others
Protein ID: WP_265371450.1
Location: 2706601..2707092 (492 bp)
Type: Others
Protein ID: WP_265371451.1
Location: 2707734..2708243 (510 bp)
Type: Others
Protein ID: WP_265371453.1
Location: 2708382..2708702 (321 bp)
Type: Others
Protein ID: WP_265371454.1
Location: 2708800..2709573 (774 bp)
Type: Others
Protein ID: WP_265371455.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
OO006_RS12525 (OO006_12525)2701693..2702946-1254WP_265371445.1glycosyltransferase-
OO006_RS12530 (OO006_12530)2703655..2704377-723WP_265371446.1DUF169 domain-containing protein-
OO006_RS12535 (OO006_12535)2704801..2705082-282WP_265371447.1type II toxin-antitoxin system YafQ family toxinToxin
OO006_RS12540 (OO006_12540)2705069..2705332-264WP_265371448.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
OO006_RS12545 (OO006_12545)2705528..2705878-351WP_265371449.1hypothetical protein-
OO006_RS12550 (OO006_12550)2705875..2706141-267WP_265371450.1hypothetical protein-
OO006_RS12555 (OO006_12555)2706601..2707092-492WP_265371451.1GNAT family N-acetyltransferase-
OO006_RS12560 (OO006_12560)2707080..2707496+417WP_265371452.1hypothetical protein-
OO006_RS12565 (OO006_12565)2707734..2708243-510WP_265371453.1N-acetyltransferase-
OO006_RS12570 (OO006_12570)2708382..2708702-321WP_265371454.1type II toxin-antitoxin system RelE/ParE family toxin-
OO006_RS12575 (OO006_12575)2708800..2709573-774WP_265371455.1class I SAM-dependent methyltransferase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(2-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-83)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10905.74 Da        Isoelectric Point: 10.1873

>T264034 WP_265371447.1 NZ_CP110623:c2705082-2704801 [Prosthecochloris sp. SCSIO W1101]
MRTIKYTSKFKSDYKREQKGRHGKKLERLLKPVISLLVEDQALPKNLVDHPLSGRWKDCRDCHIKPDLVLIYRKPDDQNL
ELVRLGSHSELGL

Download         Length: 282 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9556.00 Da        Isoelectric Point: 4.6677

>AT264034 WP_265371448.1 NZ_CP110623:c2705332-2705069 [Prosthecochloris sp. SCSIO W1101]
MITKSVVRARIDQETKDEASAILAAMGLTMSDAVRLLMKKIVAEKALPFNPLIPNKETIQAIKESRAGETHTAGSVDELF
KELDEDD

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References