Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/PIN-CcdA |
Location | 640231..640907 | Replicon | chromosome |
Accession | NZ_CP110619 | ||
Organism | Mycobacterium tuberculosis strain H37Rv-1 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | G0TPQ9 |
Locus tag | M7V54_RS02900 | Protein ID | WP_003898500.1 |
Coordinates | 640231..640644 (-) | Length | 138 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | G0TPR0 |
Locus tag | M7V54_RS02905 | Protein ID | WP_003402915.1 |
Coordinates | 640641..640907 (-) | Length | 89 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
M7V54_RS02870 | 635576..635878 | - | 303 | WP_003402896.1 | DUF3349 domain-containing protein | - |
M7V54_RS02875 | 635938..636216 | - | 279 | WP_003402901.1 | hypothetical protein | - |
M7V54_RS02880 | 636213..637466 | - | 1254 | WP_003911224.1 | inorganic phosphate transporter | - |
M7V54_RS02885 | 637586..637972 | - | 387 | WP_003402907.1 | VOC family protein | - |
M7V54_RS02890 | 638035..638919 | - | 885 | WP_003402909.1 | SDR family oxidoreductase | - |
M7V54_RS02895 | 639015..639917 | - | 903 | WP_003915439.1 | 1,4-dihydroxy-2-naphthoyl-CoA synthase | - |
M7V54_RS02900 | 640231..640644 | - | 414 | WP_003898500.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
M7V54_RS02905 | 640641..640907 | - | 267 | WP_003402915.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin |
M7V54_RS02910 | 641099..642814 | - | 1716 | WP_003402917.1 | fatty-acid--CoA ligase FadD8 | - |
M7V54_RS02915 | 642892..644496 | + | 1605 | WP_003402920.1 | amidohydrolase | - |
M7V54_RS02920 | 644493..645473 | + | 981 | WP_003402923.1 | o-succinylbenzoate synthase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 138 a.a. Molecular weight: 14667.78 Da Isoelectric Point: 7.3603
>T263971 WP_003898500.1 NZ_CP110619:c640644-640231 [Mycobacterium tuberculosis]
VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQV
PVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWPSAHAIG
VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQV
PVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWPSAHAIG
Download Length: 414 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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