Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 586904..587444 Replicon chromosome
Accession NZ_CP110535
Organism Halomonas sp. BDJS001

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OM794_RS02880 Protein ID WP_226250138.1
Coordinates 586904..587173 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OM794_RS02885 Protein ID WP_226250139.1
Coordinates 587166..587444 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OM794_RS02860 (OM794_02860) 582562..584235 - 1674 WP_226250135.1 ABC transporter permease subunit -
OM794_RS02865 (OM794_02865) 584239..585459 - 1221 WP_226250136.1 ABC transporter substrate-binding protein -
OM794_RS02870 (OM794_02870) 585489..586532 - 1044 WP_265154247.1 aminoglycoside phosphotransferase family protein -
OM794_RS02875 (OM794_02875) 586634..586756 + 123 WP_264167910.1 hypothetical protein -
OM794_RS02880 (OM794_02880) 586904..587173 - 270 WP_226250138.1 type II toxin-antitoxin system YafQ family toxin Toxin
OM794_RS02885 (OM794_02885) 587166..587444 - 279 WP_226250139.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
OM794_RS02890 (OM794_02890) 587657..590503 - 2847 WP_226250140.1 valine--tRNA ligase -
OM794_RS02895 (OM794_02895) 590599..591786 - 1188 WP_226250141.1 MFS transporter -
OM794_RS02900 (OM794_02900) 591949..592407 + 459 WP_226250142.1 Spy/CpxP family protein refolding chaperone -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(2-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10309.95 Da        Isoelectric Point: 9.4667

>T263953 WP_226250138.1 NZ_CP110535:c587173-586904 [Halomonas sp. BDJS001]
MYSLEYSTQFKKDFKKVTKMPIADILEVGNIISQLQRGEPLHPKHVDHALTGNWYGFRDCHIKPDLVLIYRVANKNLQLA
RIGSHSDLF

Download         Length: 270 bp

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 9942.30 Da        Isoelectric Point: 5.5813

>AT263953 WP_226250139.1 NZ_CP110535:c587444-587166 [Halomonas sp. BDJS001]
MKSEMLSTRIDHDTKVAFTTICDEVGLSPSQALKLFARAVINHGGIPFELKARQPNETTSAAIDELIQGKGHKAASVNTM
MDELTEANVSNV

Download         Length: 279 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References