Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2826743..2826886 | Replicon | chromosome |
| Accession | NZ_CP110534 | ||
| Organism | Enterobacter roggenkampii strain WS28-4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2826748..2826851 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2826743..2826886 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM420_RS13365 (OM420_13360) | 2823003..2824451 | + | 1449 | WP_205732340.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OM420_RS13370 (OM420_13365) | 2824558..2824797 | + | 240 | WP_008500472.1 | YebV family protein | - |
| OM420_RS13375 (OM420_13370) | 2824832..2825476 | - | 645 | WP_094943045.1 | protein-serine/threonine phosphatase | - |
| OM420_RS13380 (OM420_13375) | 2825643..2826584 | + | 942 | WP_021240429.1 | VirK/YbjX family protein | - |
| - | 2826743..2826886 | + | 144 | - | - | Antitoxin |
| - | 2826748..2826851 | - | 104 | - | - | Toxin |
| OM420_RS13385 (OM420_13380) | 2826990..2827328 | - | 339 | WP_008500468.1 | YebY family protein | - |
| OM420_RS13390 (OM420_13385) | 2827345..2828214 | - | 870 | WP_049120303.1 | copper homeostasis membrane protein CopD | - |
| OM420_RS13395 (OM420_13390) | 2828216..2828587 | - | 372 | WP_023344420.1 | CopC domain-containing protein YobA | - |
| OM420_RS13400 (OM420_13395) | 2828725..2828955 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OM420_RS13405 (OM420_13400) | 2829066..2829716 | + | 651 | WP_032675034.1 | carbon-nitrogen hydrolase family protein | - |
| OM420_RS13410 (OM420_13405) | 2829741..2830403 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263945 NZ_CP110534:c2826851-2826748 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT263945 NZ_CP110534:2826743-2826886 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
