Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2812121..2812264 | Replicon | chromosome |
| Accession | NZ_CP110533 | ||
| Organism | Enterobacter quasiroggenkampii strain WS12-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2812126..2812229 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2812121..2812264 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM418_RS13265 (OM418_13265) | 2808371..2809819 | + | 1449 | WP_277717787.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OM418_RS13270 (OM418_13270) | 2809926..2810165 | + | 240 | WP_008500472.1 | YebV family protein | - |
| OM418_RS13275 (OM418_13275) | 2810200..2810844 | - | 645 | WP_048223724.1 | protein-serine/threonine phosphatase | - |
| OM418_RS13280 (OM418_13280) | 2811021..2811962 | + | 942 | WP_277717788.1 | VirK/YbjX family protein | - |
| - | 2812121..2812264 | + | 144 | - | - | Antitoxin |
| - | 2812126..2812229 | - | 104 | - | - | Toxin |
| OM418_RS13285 (OM418_13285) | 2812369..2812707 | - | 339 | WP_048029434.1 | YebY family protein | - |
| OM418_RS13290 (OM418_13290) | 2812724..2813593 | - | 870 | WP_196351768.1 | copper homeostasis membrane protein CopD | - |
| OM418_RS13295 (OM418_13295) | 2813595..2813966 | - | 372 | WP_048029432.1 | CopC domain-containing protein YobA | - |
| OM418_RS13300 (OM418_13300) | 2814104..2814334 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OM418_RS13305 (OM418_13305) | 2814445..2815095 | + | 651 | WP_045908215.1 | carbon-nitrogen hydrolase family protein | - |
| OM418_RS13310 (OM418_13310) | 2815120..2815782 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263933 NZ_CP110533:c2812229-2812126 [Enterobacter quasiroggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT263933 NZ_CP110533:2812121-2812264 [Enterobacter quasiroggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
