Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2848158..2848301 | Replicon | chromosome |
| Accession | NZ_CP110532 | ||
| Organism | Enterobacter roggenkampii strain ws6-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2848163..2848266 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2848158..2848301 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM095_RS13730 (OM095_13720) | 2844408..2845856 | + | 1449 | WP_205732738.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OM095_RS13735 (OM095_13725) | 2845963..2846202 | + | 240 | WP_008500472.1 | YebV family protein | - |
| OM095_RS13740 (OM095_13730) | 2846237..2846881 | - | 645 | WP_049120304.1 | protein-serine/threonine phosphatase | - |
| OM095_RS13745 (OM095_13735) | 2847058..2847999 | + | 942 | WP_025910080.1 | VirK/YbjX family protein | - |
| - | 2848158..2848301 | + | 144 | - | - | Antitoxin |
| - | 2848163..2848266 | - | 104 | - | - | Toxin |
| OM095_RS13750 (OM095_13740) | 2848405..2848743 | - | 339 | WP_008500468.1 | YebY family protein | - |
| OM095_RS13755 (OM095_13745) | 2848760..2849629 | - | 870 | WP_008500467.1 | copper homeostasis membrane protein CopD | - |
| OM095_RS13760 (OM095_13750) | 2849631..2850002 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| OM095_RS13765 (OM095_13755) | 2850140..2850370 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OM095_RS13770 (OM095_13760) | 2850481..2851131 | + | 651 | WP_095428330.1 | carbon-nitrogen hydrolase family protein | - |
| OM095_RS13775 (OM095_13765) | 2851156..2851818 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263924 NZ_CP110532:c2848266-2848163 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT263924 NZ_CP110532:2848158-2848301 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
