Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 43923..44449 Replicon plasmid pRWS291.s1
Accession NZ_CP110515
Organism Klebsiella pneumoniae strain WS_29-1

Toxin (Protein)


Gene name relE Uniprot ID S1EXL1
Locus tag OM421_RS25655 Protein ID WP_000323025.1
Coordinates 44162..44449 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID S1F6D3
Locus tag OM421_RS25650 Protein ID WP_000534858.1
Coordinates 43923..44162 (+) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OM421_RS25630 (OM421_25620) 39982..41322 + 1341 WP_000589001.1 ISNCY family transposase -
OM421_RS25635 (OM421_25625) 41965..42537 + 573 WP_001515348.1 cytochrome b/b6 domain-containing protein -
OM421_RS25640 (OM421_25630) 42737..43660 + 924 WP_000167917.1 cation diffusion facilitator family transporter -
OM421_RS25645 (OM421_25635) 43794..43898 - 105 Protein_53 protein YdfV -
OM421_RS25650 (OM421_25640) 43923..44162 + 240 WP_000534858.1 type II toxin-antitoxin system antitoxin RelB Antitoxin
OM421_RS25655 (OM421_25645) 44162..44449 + 288 WP_000323025.1 type II toxin-antitoxin system mRNA interferase RelE Toxin
OM421_RS25660 (OM421_25650) 44521..44679 + 159 WP_004181898.1 type I toxin-antitoxin system Hok family toxin -
OM421_RS25665 (OM421_25655) 45282..46256 + 975 WP_004181899.1 hypothetical protein -
OM421_RS25670 (OM421_25660) 46454..46831 - 378 WP_004181901.1 hypothetical protein -
OM421_RS25675 (OM421_25665) 47521..48588 + 1068 WP_004181903.1 hypothetical protein -
OM421_RS25680 (OM421_25670) 48744..49091 + 348 WP_004181904.1 hypothetical protein -
OM421_RS25685 (OM421_25675) 49170..49403 + 234 WP_004181905.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..361178 361178


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-86)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-79)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11225.22 Da        Isoelectric Point: 10.1967

>T263880 WP_000323025.1 NZ_CP110515:44162-44449 [Klebsiella pneumoniae]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL

Download         Length: 288 bp

>T263880 NZ_CP110515:44162-44449 [Klebsiella pneumoniae]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9071.48 Da        Isoelectric Point: 4.5230

>AT263880 WP_000534858.1 NZ_CP110515:43923-44162 [Klebsiella pneumoniae]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL

Download         Length: 240 bp

>AT263880 NZ_CP110515:43923-44162 [Klebsiella pneumoniae]
ATGGGTAGCATTAACCTACGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGCGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGACTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4V7K
PDB 4V7J
PDB 4FXI
PDB 4FXE
PDB 2KC8
PDB 4FXH
PDB 2KC9

Antitoxin

Source ID Structure
PDB 4FXE
PDB 2KC8
PDB 2K29
AlphaFold DB A0A4V1CTS8

References