Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 304685..304956 | Replicon | chromosome |
| Accession | NZ_CP110511 | ||
| Organism | Escherichia coli strain ws5-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 304815..304918 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 304685..304956 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM087_RS01560 | 301240..301902 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OM087_RS01565 | 301926..302582 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OM087_RS01570 | 302684..302914 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OM087_RS01575 | 303053..303427 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| OM087_RS01580 | 303431..304303 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| OM087_RS01585 | 304316..304657 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 304685..304956 | - | 272 | - | - | Antitoxin |
| - | 304815..304918 | + | 104 | - | - | Toxin |
| OM087_RS01590 | 305053..305709 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| OM087_RS01595 | 305710..305901 | - | 192 | WP_000457842.1 | YebW family protein | - |
| OM087_RS01600 | 306006..306242 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OM087_RS01605 | 306360..307799 | - | 1440 | WP_115724073.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263840 NZ_CP110511:304815-304918 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT263840 NZ_CP110511:c304956-304685 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
