Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 6104788..6105409 Replicon chromosome
Accession NZ_CP110389
Organism Rhodopseudomonas sp. P2A-2r

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag ONR75_RS29400 Protein ID WP_265080352.1
Coordinates 6104788..6105189 (-) Length 134 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag ONR75_RS29405 Protein ID WP_265080353.1
Coordinates 6105179..6105409 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ONR75_RS29380 (ONR75_29380) 6100499..6101167 + 669 WP_265080350.1 hypothetical protein -
ONR75_RS29385 (ONR75_29385) 6101315..6101860 - 546 WP_265080351.1 adenine phosphoribosyltransferase -
ONR75_RS29390 (ONR75_29390) 6101885..6104086 - 2202 WP_265083845.1 anthranilate synthase component I -
ONR75_RS29395 (ONR75_29395) 6104308..6104775 - 468 Protein_5827 GNAT family N-acetyltransferase -
ONR75_RS29400 (ONR75_29400) 6104788..6105189 - 402 WP_265080352.1 PIN domain-containing protein Toxin
ONR75_RS29405 (ONR75_29405) 6105179..6105409 - 231 WP_265080353.1 AbrB family transcriptional regulator Antitoxin
ONR75_RS29410 (ONR75_29410) 6105463..6105931 - 469 Protein_5830 GNAT family N-acetyltransferase -
ONR75_RS29415 (ONR75_29415) 6105948..6106622 - 675 WP_265080354.1 dienelactone hydrolase family protein -
ONR75_RS29420 (ONR75_29420) 6106674..6107495 - 822 WP_265083846.1 hypothetical protein -
ONR75_RS29425 (ONR75_29425) 6107531..6107950 - 420 WP_265080355.1 NAD(P)-binding domain-containing protein -
ONR75_RS29430 (ONR75_29430) 6107947..6108918 - 972 WP_265080356.1 SDR family oxidoreductase -
ONR75_RS29435 (ONR75_29435) 6108915..6109853 - 939 WP_265080357.1 bile acid:sodium symporter family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-114)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 134 a.a.        Molecular weight: 14916.14 Da        Isoelectric Point: 4.5625

>T263782 WP_265080352.1 NZ_CP110389:c6105189-6104788 [Rhodopseudomonas sp. P2A-2r]
MSVSFFDSNVLLYLASDEPDRVLRVRQLVDSGGIISVQILNEMTSVSRRKFGMSWSETRALLTEMRDLLAIVPLTPEIHE
SGIRLAERYGFAVYDSFIVAAALAADCDTLWSEDMQNGMLVEGRLRIANPFRA

Download         Length: 402 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8550.86 Da        Isoelectric Point: 5.1333

>AT263782 WP_265080353.1 NZ_CP110389:c6105409-6105179 [Rhodopseudomonas sp. P2A-2r]
MIVSKLGDSLIVRLSDDDVKTLGLKEGDIVQVKPLDVTPARLTDPAERKAALDRLERFRGMMPADLKFNRDEANER

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References