Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4519171..4519253 Replicon chromosome
Accession NZ_CP110362
Organism Dickeya dadantii strain XJ12

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4519173..4519253 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4519171..4519253 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OL445_RS20350 4515201..4516298 - 1098 WP_284602638.1 HDOD domain-containing protein -
OL445_RS20355 4516289..4517404 - 1116 WP_013317829.1 ATP-binding protein -
OL445_RS20360 4517397..4518521 - 1125 WP_161450465.1 FIST N-terminal domain-containing protein -
- 4519171..4519253 + 83 - - Antitoxin
- 4519173..4519253 - 81 - - Toxin
OL445_RS20365 4519423..4519761 - 339 WP_013317831.1 YebY family protein -
OL445_RS20370 4520147..4520563 + 417 WP_249622066.1 hypothetical protein -
OL445_RS20375 4520903..4521151 + 249 WP_013317833.1 GlsB/YeaQ/YmgE family stress response membrane protein -
OL445_RS20380 4521262..4523004 - 1743 WP_284602645.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4512962..4521151 8189


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T263723 NZ_CP110362:c4519253-4519173 [Dickeya dadantii]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT263723 NZ_CP110362:4519171-4519253 [Dickeya dadantii]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References