Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DhiAT/dnstrm_HI1420(antitoxin)
Location 3841503..3842257 Replicon chromosome
Accession NZ_CP110362
Organism Dickeya dadantii strain XJ12

Toxin (Protein)


Gene name dhiT Uniprot ID -
Locus tag OL445_RS17310 Protein ID WP_033111742.1
Coordinates 3841503..3841760 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name dhiA Uniprot ID -
Locus tag OL445_RS17315 Protein ID WP_077246089.1
Coordinates 3841769..3842257 (+) Length 163 a.a.

Genomic Context

OL445_RS17310OL445_RS17315OL445_RS17300OL445_RS17305OL445_RS17320OL445_RS17325OL445_RS17330OL445_RS17335OL445_RS17340
Location: 3841503..3841760 (258 bp)
Type: Toxin
Protein ID: WP_033111742.1
Location: 3841769..3842257 (489 bp)
Type: Antitoxin
Protein ID: WP_077246089.1
Location: 3838265..3840415 (2151 bp)
Type: Others
Protein ID: WP_013317224.1
Location: 3840450..3840992 (543 bp)
Type: Others
Protein ID: WP_013317225.1
Location: 3842333..3842827 (495 bp)
Type: Others
Protein ID: WP_284602148.1
Location: 3842820..3843215 (396 bp)
Type: Others
Protein ID: WP_224062780.1
Location: 3843212..3844003 (792 bp)
Type: Others
Protein ID: WP_161451815.1
Location: 3844000..3844569 (570 bp)
Type: Others
Protein ID: WP_038910722.1
Location: 3844580..3846307 (1728 bp)
Type: Others
Protein ID: WP_284602149.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
OL445_RS173003838265..3840415-2151WP_013317224.1formate dehydrogenase subunit alpha-
OL445_RS173053840450..3840992-543WP_013317225.14Fe-4S dicluster domain-containing protein-
OL445_RS173103841503..3841760+258WP_033111742.1DUF4160 domain-containing proteinToxin
OL445_RS173153841769..3842257+489WP_077246089.1addiction module antitoxinAntitoxin
OL445_RS173203842333..3842827-495WP_284602148.1hydrogenase maturation peptidase HycI-
OL445_RS173253842820..3843215-396WP_224062780.1formate hydrogenlyase maturation HycH family protein-
OL445_RS173303843212..3844003-792WP_161451815.1NADH-quinone oxidoreductase subunit B family protein-
OL445_RS173353844000..3844569-570WP_038910722.1hydrogenase 4 subunit H-
OL445_RS173403844580..3846307-1728WP_284602149.1hydrogenase large subunit-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Protein of unknown function DUF4160

(9-73)

Antitoxin

Uncharacterized protein HI1420

(81-157)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9972.56 Da        Isoelectric Point: 7.5550

>T263721 WP_033111742.1 NZ_CP110362:3841503-3841760 [Dickeya dadantii]
MPEIDRLAGLIFYLYFYDDGRHHQPHVHVCYGDDELIIAIDTGIEIEGYLPNSKRKMAIRHINAHRQHLLEMWKLAVKGR
HPGKL

Download         Length: 258 bp

Antitoxin


Download         Length: 163 a.a.        Molecular weight: 17861.46 Da        Isoelectric Point: 6.9790

>AT263721 WP_077246089.1 NZ_CP110362:3841769-3842257 [Dickeya dadantii]
MHKIIDVDVTGDFSLRLTYEDGLICDVDLYQYAPGPVFSNASLFIKFGLLPDGALEWLPDIKISASDLRKKGVYVGHTLA
VRERHFADVISRAFYDAVIENRPEILQAALKTAVEKHGNSTVAKEAGAKSRTSLYKSLNKNTNVSLATVVSLAHTVLQLE
EK

Download         Length: 489 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References