Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /SpoIISA(toxin) |
| Location | 2408250..2409228 | Replicon | chromosome |
| Accession | NC_017208 | ||
| Organism | Bacillus thuringiensis serovar chinensis CT-43 | ||
Toxin (Protein)
| Gene name | spoIISA | Uniprot ID | M1Q940 |
| Locus tag | CT43_RS12265 | Protein ID | WP_000624982.1 |
| Coordinates | 2408250..2408987 (+) | Length | 246 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | M1PKC2 |
| Locus tag | CT43_RS12270 | Protein ID | WP_000237819.1 |
| Coordinates | 2409100..2409228 (+) | Length | 43 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CT43_RS12245 | 2403892..2404674 | + | 783 | WP_000355672.1 | class I SAM-dependent methyltransferase | - |
| CT43_RS12250 | 2404832..2406517 | - | 1686 | WP_003270568.1 | alpha-keto acid decarboxylase family protein | - |
| CT43_RS12255 | 2406625..2407107 | + | 483 | WP_000191889.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CT43_RS12260 | 2407274..2408011 | + | 738 | WP_000594152.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | - |
| CT43_RS12265 | 2408250..2408987 | + | 738 | WP_000624982.1 | type II toxin-antitoxin system SpoIISA family toxin | Toxin |
| CT43_RS12270 | 2409100..2409228 | + | 129 | WP_000237819.1 | hypothetical protein | Antitoxin |
| CT43_RS34460 | 2409301..2409477 | + | 177 | WP_000852631.1 | hypothetical protein | - |
| CT43_RS12280 | 2409514..2409795 | - | 282 | WP_001032899.1 | hypothetical protein | - |
| CT43_RS12285 | 2409822..2410034 | - | 213 | WP_000364657.1 | hypothetical protein | - |
| CT43_RS34465 | 2410306..2410482 | + | 177 | WP_000852630.1 | hypothetical protein | - |
| CT43_RS12295 | 2410626..2412095 | + | 1470 | WP_000287547.1 | beta-Ala-His dipeptidase | - |
| CT43_RS12300 | 2412341..2413150 | + | 810 | WP_000678371.1 | C39 family peptidase | - |
| CT43_RS12305 | 2413176..2413778 | + | 603 | WP_000517270.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 246 a.a. Molecular weight: 28323.03 Da Isoelectric Point: 8.2998
>T26372 WP_000624982.1 NC_017208:2408250-2408987 [Bacillus thuringiensis serovar chinensis CT-43]
MISNIRIGLFVLAIVFVVLVFFYWKNEELYEEKKQRIRKTWYGLFIISVTVYFMIKGIDLTLWKNLLMFTAMVIFVDIAF
ILTPNISEIWGAKFSDIGKTVQSIKRSLIASKARGEIYTTIIQNVNPSVFGTMEWHTEEEYTKSLNAFLDSYGEKIGAKI
VVFEAAKELNTNFRGIRSQFSIIVPLEHIEQLNEQKAVQVENVGIIPAKIVSDVFIVIDGKKNNLQDRDFENVYNLTIHH
SYFSK
MISNIRIGLFVLAIVFVVLVFFYWKNEELYEEKKQRIRKTWYGLFIISVTVYFMIKGIDLTLWKNLLMFTAMVIFVDIAF
ILTPNISEIWGAKFSDIGKTVQSIKRSLIASKARGEIYTTIIQNVNPSVFGTMEWHTEEEYTKSLNAFLDSYGEKIGAKI
VVFEAAKELNTNFRGIRSQFSIIVPLEHIEQLNEQKAVQVENVGIIPAKIVSDVFIVIDGKKNNLQDRDFENVYNLTIHH
SYFSK
Download Length: 738 bp
>T26372 NC_017208:2408250-2408987 [Bacillus thuringiensis serovar chinensis CT-43]
ATGATCTCTAACATTCGAATTGGCCTATTTGTTTTAGCGATTGTCTTTGTAGTCCTTGTTTTCTTTTATTGGAAAAATGA
GGAGTTGTACGAGGAGAAAAAGCAACGTATTAGAAAGACTTGGTATGGTTTGTTTATCATATCTGTCACCGTGTATTTCA
TGATAAAAGGAATTGATTTAACCCTCTGGAAAAATCTTTTAATGTTTACTGCAATGGTTATTTTTGTTGATATTGCGTTC
ATTTTAACACCTAATATTTCAGAAATATGGGGTGCGAAATTTAGTGATATTGGCAAGACAGTTCAATCAATAAAACGATC
ATTAATTGCATCTAAAGCGAGAGGAGAAATATACACGACAATTATTCAAAATGTTAATCCATCAGTATTCGGTACGATGG
AATGGCATACGGAAGAGGAATATACAAAGAGCTTAAATGCATTTTTAGATTCATATGGGGAAAAGATTGGTGCGAAAATT
GTTGTTTTTGAAGCCGCGAAGGAATTAAATACAAACTTTCGTGGTATTCGCTCGCAATTTAGTATTATCGTTCCGTTAGA
ACATATCGAGCAATTGAATGAGCAGAAAGCGGTGCAAGTAGAAAATGTCGGGATTATACCAGCAAAAATAGTAAGTGACG
TTTTCATTGTTATTGATGGAAAGAAAAATAACCTGCAAGATCGGGATTTTGAAAATGTATATAATTTAACAATACATCAT
AGTTATTTTAGTAAATAA
ATGATCTCTAACATTCGAATTGGCCTATTTGTTTTAGCGATTGTCTTTGTAGTCCTTGTTTTCTTTTATTGGAAAAATGA
GGAGTTGTACGAGGAGAAAAAGCAACGTATTAGAAAGACTTGGTATGGTTTGTTTATCATATCTGTCACCGTGTATTTCA
TGATAAAAGGAATTGATTTAACCCTCTGGAAAAATCTTTTAATGTTTACTGCAATGGTTATTTTTGTTGATATTGCGTTC
ATTTTAACACCTAATATTTCAGAAATATGGGGTGCGAAATTTAGTGATATTGGCAAGACAGTTCAATCAATAAAACGATC
ATTAATTGCATCTAAAGCGAGAGGAGAAATATACACGACAATTATTCAAAATGTTAATCCATCAGTATTCGGTACGATGG
AATGGCATACGGAAGAGGAATATACAAAGAGCTTAAATGCATTTTTAGATTCATATGGGGAAAAGATTGGTGCGAAAATT
GTTGTTTTTGAAGCCGCGAAGGAATTAAATACAAACTTTCGTGGTATTCGCTCGCAATTTAGTATTATCGTTCCGTTAGA
ACATATCGAGCAATTGAATGAGCAGAAAGCGGTGCAAGTAGAAAATGTCGGGATTATACCAGCAAAAATAGTAAGTGACG
TTTTCATTGTTATTGATGGAAAGAAAAATAACCTGCAAGATCGGGATTTTGAAAATGTATATAATTTAACAATACATCAT
AGTTATTTTAGTAAATAA
Antitoxin
Download Length: 43 a.a. Molecular weight: 4953.36 Da Isoelectric Point: 3.9798
>AT26372 WP_000237819.1 NC_017208:2409100-2409228 [Bacillus thuringiensis serovar chinensis CT-43]
VVKDYDNDFFKEGNEDTTDFSLIKGDTLQQVEELEEELKRKS
VVKDYDNDFFKEGNEDTTDFSLIKGDTLQQVEELEEELKRKS
Download Length: 129 bp
>AT26372 NC_017208:2409100-2409228 [Bacillus thuringiensis serovar chinensis CT-43]
GTGGTAAAAGATTATGACAATGATTTTTTTAAAGAAGGTAACGAAGATACAACAGATTTCTCTTTAATAAAAGGGGATAC
GTTGCAGCAAGTAGAAGAATTAGAAGAAGAATTAAAAAGAAAATCATAA
GTGGTAAAAGATTATGACAATGATTTTTTTAAAGAAGGTAACGAAGATACAACAGATTTCTCTTTAATAAAAGGGGATAC
GTTGCAGCAAGTAGAAGAATTAGAAGAAGAATTAAAAAGAAAATCATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|